Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5940
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33...    30   1.1  
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33...    30   1.1  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   3.4  

>12_01_0042 +
           337131-337612,338727-338898,338996-339204,339414-339572,
           339914-340262
          Length = 456

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 471 GNSSQNCQTQASSFQIEDCTEAQKDWGLRDKKK 569
           G+ +  C  +    QIED   A  D+G+ DK K
Sbjct: 347 GDDNNKCLNETEPIQIEDYRSATTDYGMMDKAK 379


>11_01_0043 +
           328272-328753,329233-329298,330082-330253,330357-330565,
           330779-330937,331279-331627
          Length = 478

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 471 GNSSQNCQTQASSFQIEDCTEAQKDWGLRDKKK 569
           G+ +  C  +    QIED   A  D+G+ DK K
Sbjct: 369 GDDNNKCLNETEPIQIEDYRSATTDYGMMDKAK 401


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 84  VSQNTGTCPESSCACPETSC 143
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.128    0.282 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,219,941
Number of Sequences: 37544
Number of extensions: 58810
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)