Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5938
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    29   0.55 
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    29   0.55 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   1.3  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.9  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   5.1  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    26   5.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.1  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   6.8  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   6.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   9.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.0  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 97
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 97
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 204 IYRMKSVGESTEPCGTPALMV 142
           +YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 131 SDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSR 295
           S  +T+ + VP+ S      FI Y + +LSI  + C+        ++  ++++ +
Sbjct: 39  SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACFKIHYVSSPKHPNYKNIEK 93


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 74  WIASFLDGRSITVVVDGDCSDTMTIN-AGVPQGS 172
           W  SFL G+ +TVV +   S+   IN   +P GS
Sbjct: 519 WSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGS 552


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 155 GVPQGSVLSPTLFILYINDML 217
           G+PQGS+LS  L   Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 607 KYPLRSVEDSQHFGRQLGFAFQM 539
           +YP+    DSQ+ G  +GFAF +
Sbjct: 202 RYPVNESGDSQYQGALVGFAFNL 224


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 213 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 127
           MSL+Y  +SVG  T PCG+   +  ++ Q
Sbjct: 1   MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 155 GVPQGSVLSPTLFILYINDM 214
           G PQGS++SP L  +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 QGSVLSPTLFILYINDMLSIDGMHCY 241
           + S L+ +L  LY+ D + ID  H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 414 ARSLRRRTPLSWRRNSKEYPCNLPRVLGYLGSTFR 518
           A +L R    SW  NS+E+P +L    G +G   +
Sbjct: 124 ADNLTRPHWTSWTENSEEFPSSLVMSTGVIGQRLK 158


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 508 RHFERCPVSESFGRQSQ 558
           ++FE CPVS++ GR S+
Sbjct: 353 QNFEWCPVSDALGRDSK 369


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 353 APESSPLQTQVLIVSLAPRSERDSDGRYIAHPPCCHPHS 237
           AP SS  Q QV +     RS ++S     + PP  HP S
Sbjct: 38  APSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,418
Number of Sequences: 5004
Number of extensions: 81092
Number of successful extensions: 225
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)