Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5938
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 66 3e-11
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 62 3e-10
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 61 7e-10
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 52 6e-07
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 42 6e-04
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 31 0.68
Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 8.4
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 28 8.4
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 28 8.4
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 28 8.4
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 8.4
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 8.4
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 66.1 bits (154), Expect = 3e-11
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 7/202 (3%)
Frame = +2
Query: 35 KLPSYGIPEGLCKWIASFLDGRSITVVVDGDCS-DTMTINAGVPQGSVLSPTLFILYIND 211
KL +G+ C W FL+ R+ +V ++ S ++ I++GVPQGSV P LFIL+IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 212 MLSID-----GMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGEL 376
+L ID + C+ADD I H + ++NS+ + W +L
Sbjct: 899 LL-IDLAPTINISCFADDVK-----IFHTD-------------PTIIQNSIDIIVSWSKL 939
Query: 377 NLVQFNPLKTQVCAF-TAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGK 553
N + P K+ + A T K+ + GV + PS ++ LG+ ++F H+
Sbjct: 940 NELPLAPTKSALLALGTRNKN---QSYSVDGVPITPSSTVRDLGLITDCKLKFEHHIVKV 996
Query: 554 AKLASKMLGVLNRAKRVLHAWT 619
+ LA ML R+K++L A++
Sbjct: 997 SCLA--ML----RSKQILKAFS 1012
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 62.5 bits (145), Expect = 3e-10
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 FDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLS 181
FDR+ H LL KL S + L W+ FL RS V + S GVPQG+VLS
Sbjct: 25 FDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLS 84
Query: 182 PTLFILYINDMLSI--DGMHC--YADDS 253
P LF +Y+ND+ SI + + C +ADD+
Sbjct: 85 PLLFGIYVNDISSILPEKVACKQFADDT 112
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 FDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGSVL 178
FD+V H LL KL +GI C W FL R+ +V V+ + I++GVP+GSV
Sbjct: 4 FDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVS 63
Query: 179 SPTLFILYINDML 217
P LF+++IN +L
Sbjct: 64 GPFLFLIFINSLL 76
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 51.6 bits (118), Expect = 6e-07
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +2
Query: 2 FDRVWHRALLSKL-PSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVL 178
FD+V + L + L + GI + W+ ++L R I D S T+ GVPQGSV+
Sbjct: 480 FDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVI 539
Query: 179 SPTLFILYINDMLSIDG--MHCYADDSTGDAR 268
SP LF Y+ DM + + YADD + AR
Sbjct: 540 SPNLFTFYLKDMPTQQDTMLISYADDMSIIAR 571
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 FDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDC-SDTMTINAGVPQGSVL 178
FD+V H L+SKL + + L W + ++ +V V+ S+ G P+GS
Sbjct: 898 FDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQIGAPRGSES 957
Query: 179 SPTLFILYINDML 217
+F+++IN +L
Sbjct: 958 RQFMFLVFINSLL 970
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 216 NMSLIYRMKSVGESTEPCGTPALMVMVSEQ 127
++SL KS GE T+PCGTP + SE+
Sbjct: 49 DISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical
protein T10G3.2 protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 321 FDRLSCTTLRERL*WPIYRASPVLSSA*QCMPSIDNMSLIYRMKSVGESTEPCGTPA 151
F ++ C +LR R P+ R+ P+ S S+ + ++ M GE+ P G A
Sbjct: 283 FSQMCCNSLRRR---PVRRSHPISPSPGTSPSSVVTIQNVFGMTLSGEANGPAGQEA 336
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 705 AGIWGAPAPEMGAVLPREAXLVLYKAKAFVQA*S--TRFALLRTPSILDAN 559
+G+ G+P+P MGA +P A ++ + F + S T ++ L+ PS L N
Sbjct: 212 SGMPGSPSPVMGARMPSSAGGLMMRPIGFPDSDSSLTSWSPLQQPSQLSIN 262
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 705 AGIWGAPAPEMGAVLPREAXLVLYKAKAFVQA*S--TRFALLRTPSILDAN 559
+G+ G+P+P MGA +P A ++ + F + S T ++ L+ PS L N
Sbjct: 212 SGMPGSPSPVMGARMPSSAGGLMMRPIGFPDSDSSLTSWSPLQQPSQLSIN 262
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 244 RIAMHAINRQHVIDIQDEERGGEHRTLWNARVNGHGIRTVTVYNDRDAPPIQKASDPLAE 65
RI+ NR V DI+ + GE LWN+R G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 64 TL 59
+L
Sbjct: 2900 SL 2901
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 244 RIAMHAINRQHVIDIQDEERGGEHRTLWNARVNGHGIRTVTVYNDRDAPPIQKASDPLAE 65
RI+ NR V DI+ + GE LWN+R G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 64 TL 59
+L
Sbjct: 2900 SL 2901
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 244 RIAMHAINRQHVIDIQDEERGGEHRTLWNARVNGHGIRTVTVYNDRDAPPIQKASDPLAE 65
RI+ NR V DI+ + GE LWN+R G+ V + P I +D L
Sbjct: 658 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 713
Query: 64 TL 59
+L
Sbjct: 714 SL 715
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 705 AGIWGAPAPEMGAVLPREAXLVLYKAKAFVQA*S--TRFALLRTPSILDAN 559
+G+ G+P+P MGA +P A ++ + F + S T ++ L+ PS L N
Sbjct: 212 SGMPGSPSPVMGARMPSSAGGLMMRPIGFPDSDSSLTSWSPLQQPSQLSIN 262
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 705 AGIWGAPAPEMGAVLPREAXLVLYKAKAFVQA*S--TRFALLRTPSILDAN 559
+G+ G+P+P MGA +P A ++ + F + S T ++ L+ PS L N
Sbjct: 212 SGMPGSPSPVMGARMPSSAGGLMMRPIGFPDSDSSLTSWSPLQQPSQLSIN 262
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 244 RIAMHAINRQHVIDIQDEERGGEHRTLWNARVNGHGIRTVTVYNDRDAPPIQKASDPLAE 65
RI+ NR V DI+ + GE LWN+R G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 64 TL 59
+L
Sbjct: 2900 SL 2901
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 244 RIAMHAINRQHVIDIQDEERGGEHRTLWNARVNGHGIRTVTVYNDRDAPPIQKASDPLAE 65
RI+ NR V DI+ + GE LWN+R G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 64 TL 59
+L
Sbjct: 2900 SL 2901
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,080,651
Number of Sequences: 27780
Number of extensions: 476889
Number of successful extensions: 1212
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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