Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5938
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.1  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 380 SSIHPIWRLAPESSPLQTQVLIVSLAPRSERDSDG 276
           S +   W+  PE+  L+  +++  + PRS +DS+G
Sbjct: 13  SIVDAAWKPLPEN--LKEDLIVYQVYPRSFKDSNG 45


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 481 RLQGYSLELRRHDKGVLLRSERANLCL*RVELNQVQFTPFGDSPQR--VLHFR 329
           +L+G    +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 354 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 406


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 380 SSIHPIWRLAPESSPLQTQVLIVSLAPRSERDSDG 276
           S +   W+  PE+  L+  +++  + PRS +DS+G
Sbjct: 13  SIVDAAWKPLPEN--LKEDLIVYQVYPRSFKDSNG 45


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 481 RLQGYSLELRRHDKGVLLRSERANLCL*RVELNQVQFTPFGDSPQR--VLHFR 329
           +L+G    +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 444 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 496


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -1

Query: 727 CMKSNGRSWYLGSPGPRDGSSTPTRGRTCAL*SKSLCPGV 608
           C   NG   +L  P PR  S +P     C    K L  G+
Sbjct: 36  CQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGL 75


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -1

Query: 727 CMKSNGRSWYLGSPGPRDGSSTPTRGRTCAL*SKSLCPGV 608
           C   NG   +L  P PR  S +P     C    K L  G+
Sbjct: 36  CQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGL 75


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 526 PVSESFGRQS-QV--GVQNAGSPQQSEAGTSRLDKGFCFIKHKXGLAW 660
           PV E + R++ Q+  G++N GS +   AGT  +    C+     G+ W
Sbjct: 183 PVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKW 230


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 526 PVSESFGRQS-QV--GVQNAGSPQQSEAGTSRLDKGFCFIKHKXGLAW 660
           PV E + R++ Q+  G++N GS +   AGT  +    C+     G+ W
Sbjct: 236 PVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKW 283


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 305 QERRSKLVSEVENSLGRVSKW 367
           QER S+LV  +EN    V  W
Sbjct: 465 QERESELVPYLENKGNGVYAW 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,292
Number of Sequences: 438
Number of extensions: 5586
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)