Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5937
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    26   5.4  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   7.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.4  

>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 145 ASNDGFTNTECLIQTPDGGP 204
           ++ D F   +CLIQ PDG P
Sbjct: 30  SNEDDFFTWDCLIQGPDGTP 49


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 389 FYFLGFWIFIYKKEIMISRFYT 324
           F  LGFWI+I    + + RF+T
Sbjct: 207 FQGLGFWIYIIVYAVNMCRFFT 228


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 476 PLKVTEDRWK*LSAFIRQKLLGRYQSLSQFYFL 378
           P+   ED+W+ L AF++ K L +    S  YF+
Sbjct: 43  PVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,784
Number of Sequences: 5004
Number of extensions: 55915
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)