Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5934
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   2.5  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   7.7  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
           P   P G    PG P    RGP    GRP  +P
Sbjct: 517 PTQFPAGG-PAPGYPGMNARGPVPAQGRPMMMP 548


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 496 EEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSI 636
           E   YPK   N ++   HS  N+   E ++  +    YSF   D S+
Sbjct: 153 EGYTYPKLS-NDNLEVDHSNTNEPADENKNQSIENADYSFSPEDFSV 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.125    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,543
Number of Sequences: 5004
Number of extensions: 34998
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)