Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5934
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.052
03_02_0123 + 5745390-5745576,5745993-5746082,5746255-5746351,574... 31 0.85
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.1
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 31 1.1
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003 30 1.5
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 29 3.4
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 29 4.5
03_01_0540 - 4055635-4055743,4055829-4055981,4056037-4056104,405... 28 6.0
04_03_0799 - 19805190-19805749,19806316-19806403 28 7.9
02_04_0413 + 22681957-22682035,22682253-22682788 28 7.9
01_05_0624 + 23772613-23774671,23774737-23775596 28 7.9
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Frame = +3
Query: 147 PRCQARCCYPCSLP------RGPCSVPGRPSC-LP-RGPCSVPGRPSCLP 272
P C C PCS P RG C P P C LP PC +P P C P
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPPPCPP 156
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 153 CQARCCYPCSLP-RGPCSVPGRPSCLPRG 236
C C PC LP PC +P P C PRG
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPRG 158
>03_02_0123 +
5745390-5745576,5745993-5746082,5746255-5746351,
5746446-5746584
Length = 170
Score = 31.1 bits (67), Expect = 0.85
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +3
Query: 135 PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPLLLG*ICLV 314
P +APRC+ RC + P G LP L +S+P+ G I
Sbjct: 12 PVTAPRCRGRCSAATAATSAPEKTAGHVGRLPLAIVPAAAASLSLVLWSSPVHAG-IMSG 70
Query: 315 PKHRPS*PAPDYP 353
K S P PD P
Sbjct: 71 FKGMESVPGPDLP 83
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +3
Query: 108 FFPKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTP 287
F P P P P Q+ Y S P P P P+CL P P P LP+ S P
Sbjct: 561 FSPPPPPPPPPPPPLPQSN--YASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVP 618
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 120 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
HC P P P C C C G C+ P P C G CS+ +C
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCSISDGGAC 167
>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
Length = 385
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 183 LPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPL 290
+PR PC P RP P P ++ P STPL
Sbjct: 35 IPRRPCPPPVRPPDTPAMPPALTSNPPSFRPLSTPL 70
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 171 YPCSLPRGPCSVPGRPSCLPR--GPCSVPGRPSC-LPHFSTP 287
YP P G C+ P C P+ P P +P+C P +S+P
Sbjct: 113 YPPPPPCGGCATPHCCDCHPKPPPPAPAPAKPACGCPAWSSP 154
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 25 IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 144
IV+L A V AV L P HY+P VSS S P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55
>03_01_0540 -
4055635-4055743,4055829-4055981,4056037-4056104,
4056486-4056580,4057180-4057241,4057371-4057410,
4058124-4059141,4059231-4059611,4059873-4059880,
4061005-4061067,4061416-4061719
Length = 766
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFS 281
P +L + P S+P P P G P RP PH +
Sbjct: 132 PDALLQSPISIPVLPPPDPSGCLLCPARPGAAPHLT 167
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 120 HCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
HC P P C + C G C+ P C G CS+ +C
Sbjct: 124 HCCPAPPKPKPKPCECTHHCGGHGGGCNKPAVSPC--GGGCSISDGGAC 170
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Frame = +3
Query: 123 CAP*PASA---PRCQARCCYPCSLPRGPCSVPGRP----SCLPRGPCSVP 251
C P P+ P C+ CC C G C P P C P PC P
Sbjct: 129 CPPSPSCENHHPPCKPGCCC-CGCSGGECPPPPSPPCQHECPPTPPCEHP 177
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 132 MAHNALGRNGFSGRVVHGSSQKSSFRHRDQSTQYYD 25
+ H L R GF GRV H S+ + D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.125 0.352
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,984
Number of Sequences: 37544
Number of extensions: 277754
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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