Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5934
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 38 0.005
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 32 0.44
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.44
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 32 0.44
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 32 0.44
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 32 0.44
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 32 0.44
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.58
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.58
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 31 0.58
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 31 0.58
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 31 1.0
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 30 1.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 30 1.3
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 30 1.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 30 1.3
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen pro... 29 2.3
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 3.1
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 3.1
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 29 3.1
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 29 4.1
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.1
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 29 4.1
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 29 4.1
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 28 5.4
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 28 5.4
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 27 9.4
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = +3
Query: 129 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPG--RPSCLPHFSTPLLLG* 302
P P P C C P P P V G P C GP P P+C P P+L G
Sbjct: 115 PPPCFGPACPPPCFGPACAPSAPIIVNGPPPCF--GPACPPPCFGPACAPPPPAPILFGS 172
Query: 303 I-CLVPKH 323
+ C P +
Sbjct: 173 VTCCAPNN 180
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/68 (33%), Positives = 25/68 (36%)
Frame = +3
Query: 114 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPLL 293
P C P AP A PC P P G P+C+P P V G P C P
Sbjct: 41 PPPCFDCPPPAPIFVAPPPPPCFGPACPPPCFG-PACVPLAPIIVNGPPPCFGPACPPPC 99
Query: 294 LG*ICLVP 317
G C P
Sbjct: 100 FGPACAPP 107
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +3
Query: 129 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPG--RPSCLPHFSTPLLL 296
P P P C C P P P V G P C GP P P+C P S P+++
Sbjct: 87 PPPCFGPACPPPCFGPACAPPAPIIVNGPPPCF--GPACPPPCFGPACAP--SAPIIV 140
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +3
Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPLLLG*ICLVPKHRP 329
PC P P G P+C P P V G P C P G C P P
Sbjct: 117 PCFGPACPPPCFG-PACAPSAPIIVNGPPPCFGPACPPPCFGPACAPPPPAP 167
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Frame = +3
Query: 135 PASAPRCQARCCYPCS--LPRGP--CSVPG------RPSCLPRGPCSVPGRPSCLPHFST 284
PA P C C P + + GP C P P+C P P V G P C
Sbjct: 65 PACPPPCFGPACVPLAPIIVNGPPPCFGPACPPPCFGPACAPPAPIIVNGPPPCFGPACP 124
Query: 285 PLLLG*IC 308
P G C
Sbjct: 125 PPCFGPAC 132
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 135 PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPR----GPCSVPGRPSCLP 272
P++ +C+ CC P P GP VPG+P R G VPG+P P
Sbjct: 94 PSANLQCEG-CCLPG--PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAP 140
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 177 CSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTP 287
CS+ PC P P C P P P P C P F P
Sbjct: 23 CSMGPPPCPPPPPPMCAP-PPLPCPPPPICPPQFCPP 58
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
AP CQ +C C+LP P + SC C P C
Sbjct: 270 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 310
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
AP CQ +C C+LP P + SC C P C
Sbjct: 271 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 311
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
AP CQ +C C+LP P + SC C P C
Sbjct: 186 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 135 PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPR----GPCSVPGRPSCLP 272
P++ +C+ CC P P GP VPG+P R G VPG+P P
Sbjct: 94 PSANLQCEG-CCLPG--PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAP 140
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
AP CQ +C C+LP P + SC C P C
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
AP CQ +C C+LP P + SC C P C
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Frame = +3
Query: 129 P*PASAPRCQARCC-------YPC--SLPRGPCSVPGRPSCLPRGP-CSVPGRPSCLP 272
P P AP +CC PC P G C GRP C + P C G+ +C P
Sbjct: 146 PPPPPAPEAPTQCCGSQPYGRTPCRSGCPNGDCGC-GRPCCYYQNPTCCNQGQKACCP 202
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 153 CQARCCY---PCSLPRGPCSVPGRPSCLPR-GPCSVPGRPSCLP 272
C + CC P L P P +P C P GPC P P+C P
Sbjct: 56 CSSSCCSSQKPIPLACCPPPPPPKPCCQPAFGPCC-PATPNCCP 98
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = +3
Query: 39 CFGRGVESWTSGCSRALLSR*SRFFPKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRP 218
C G + S CS + S + P C P P P+ CC P GPC P P
Sbjct: 44 CSGCDLFPNRSCCSSSCCSS-QKPIPLACCP-PPPPPK---PCCQPAF---GPCC-PATP 94
Query: 219 SCLPRGPCSVPGRP 260
+C P+ PC RP
Sbjct: 95 NCCPK-PCCRGRRP 107
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
AP CQ +C C+LP P + SC C P C
Sbjct: 410 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCHQQCIPQC 450
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGP-CSVPGRPSC 266
AP CQ +C C+LP P + SC P C P C
Sbjct: 309 APVCQQQCAPQCTLPSAPVCQQCQTSCQQFAPVCQEQCAPQC 350
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +3
Query: 120 HCAP*PASAPRCQARCCYPCSLP--RGPCSVPGRPSCLPR--GPCSVPGRPSCLPHFS 281
H P +A Q + C C +P RGP G P+ LP GP PGRP P+ S
Sbjct: 100 HYNPSMLAADSPQFQECPACCIPGERGPSGDSGLPA-LPGAPGPDGAPGRPGTTPNAS 156
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = +3
Query: 192 GPCSVPGRPSCLPRGPCSVPGR----PSCLP 272
GP PGRP P C +P R P CLP
Sbjct: 141 GPDGAPGRPGTTPNASC-IPERVFEPPPCLP 170
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 263
P PR PC P R C P G C G S
Sbjct: 1925 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 1954
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 174 PCSLPRGP-CSVPGRPSCLPRGPCSVPGRPSCLP 272
P S RG C P PS PR PC P R C P
Sbjct: 1910 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 1943
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 263
P PR PC P R C P G C G S
Sbjct: 2509 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 2538
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 174 PCSLPRGP-CSVPGRPSCLPRGPCSVPGRPSCLP 272
P S RG C P PS PR PC P R C P
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 2527
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 263
P PR PC P R C P G C G S
Sbjct: 1925 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 1954
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 174 PCSLPRGP-CSVPGRPSCLPRGPCSVPGRPSCLP 272
P S RG C P PS PR PC P R C P
Sbjct: 1910 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 1943
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 263
P PR PC P R C P G C G S
Sbjct: 2509 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 2538
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 174 PCSLPRGP-CSVPGRPSCLPRGPCSVPGRPSCLP 272
P S RG C P PS PR PC P R C P
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 2527
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 266
AP CQ +C C+ P P + SC C P C
Sbjct: 186 APVCQQQCAPQCTFPSAPACQQCQTSCQQTQQCQQQCIPQC 226
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 174 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 263
P PR PC P R C P G C G S
Sbjct: 2509 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 2538
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 174 PCSLPRGP-CSVPGRPSCLPRGPCSVPGRPSCLP 272
P S RG C P PS PR PC P R C P
Sbjct: 2494 PDSSQRGRVCEPPPPPSPPPRHPCQDPERNDCHP 2527
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPLLLG*ICL- 311
ASA C A CC P + P G PGRP P P +PG P P + C
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGRPPQQPCDPITPPPCQP 147
Query: 312 VPKHRPS*PAPDYP 353
P+ P P P P
Sbjct: 148 CPQGPPGPPGPPGP 161
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPLLLG*ICL- 311
ASA C A CC P + P G PGRP P P +PG P P + C
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGRPPQQPCDPITPPPCQP 147
Query: 312 VPKHRPS*PAPDYP 353
P+ P P P P
Sbjct: 148 CPQGPPGPPGPPGP 161
>AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen
protein 46 protein.
Length = 302
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 156 QARCCYPCSLPRGPCSVPGRPSCLP--RGPCSVPGRPSCLP 272
++R C C P+GP +PGR LP +G PG P+ LP
Sbjct: 94 RSRVC-ECRHPQGPPGIPGRDG-LPGTKGSEGAPGLPARLP 132
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 129 P*PASAPRCQARCCYPCSLPRGPCSVPG-RPS-CLPRGPCSVPGRPSCLP 272
P P SAP C C +P PC P RP+ C+ P VP R P
Sbjct: 154 PPPPSAPAC----CVAAPVPTNPCCQPAPRPAPCVCSAPRPVPCRCGAPP 199
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Frame = +3
Query: 123 CAP*PASAPRCQARCCYPCSLPRGPCSVPGRPS------CLPRGPCSVPGRPSC 266
C P P AP CC P P PC P P C + P VP P C
Sbjct: 100 CGPSPVPAP-----CCPPPPAPAAPCCPPPPPPTPSPLVCCKQAP--VPENPCC 146
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 123 CAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
C P P AP + P P P PG P P+ PC P C P
Sbjct: 103 CQPGPQGAPGAPGKPGRP-GKPGAP-GFPGNPGKAPQKPCEEITPPPCKP 150
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 123 CAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
C P P AP + P P P PG P P+ PC P C P
Sbjct: 103 CQPGPQGAPGAPGKPGRP-GKPGAP-GFPGNPGKAPQKPCEEITPPPCKP 150
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 171 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSCLP 272
YP S + C +P C P PC +P P C P
Sbjct: 627 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPP 662
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 171 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSCLP 272
YP S + C +P C P PC +P P C P
Sbjct: 272 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPP 307
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 171 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSCLP 272
YP S + C +P C P PC +P P C P
Sbjct: 224 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPP 259
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 171 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSCLP 272
YP S + C +P C P PC +P P C P
Sbjct: 952 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCCPP 987
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
ASA C A CC P + P G PGRP P P +PG P P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGRPP 133
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 135 PASAPRCQARC---CYPCSLPRGPCSV-PGRPSCLPRGPCSVPGRPSCLPHFS 281
P+ AP+CQ C C +L + P PSC P+ C +PSC+ ++
Sbjct: 648 PSCAPQCQPACDPQCISFTLKLPVMTTPPPTPSCQPQ--CQPACQPSCMETYT 698
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
ASA C A CC P + P G PGRP P P +PG P P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGRPP 133
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
ASA C A CC P + P G PGRP P P +PG P P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGRPP 133
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
ASA C A CC P + P G PGRP P P +PG P P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGRPP 133
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLP 272
ASA C A CC P + P G PGRP P P +PG P P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGRPP 133
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 168 CYPCSLPRGPCSVPGRPSCLPRGP--CSVPGRP 260
C PC P+GP VPG P P P + GRP
Sbjct: 168 CLPC--PQGPAGVPGHPG-FPGDPGEYGIGGRP 197
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = +3
Query: 192 GPCSVPGRPSCLPRGPCSVPGR----PSCLP 272
GP PGRP P C +P R P CLP
Sbjct: 141 GPDGAPGRPGTTPNASC-IPERVFEPPPCLP 170
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +3
Query: 144 APRCQARCCYPCSLPRGPCSVPGRPSCL-PRGPCSVPGRPSCLPHFSTP 287
AP C C P G PG P PRGP + G+P L + P
Sbjct: 129 APPPGTNACQKC--PTGAPGPPGLPGPKGPRGPAGIEGKPGRLGEDNRP 175
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPLLLG*ICL- 311
AS C A CC P + P G PGRP P P +PG P P + C
Sbjct: 58 ASTGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNPGHPPQQPCDPITPPPCQP 114
Query: 312 VPKHRPS*PAPDYP 353
P+ P P P P
Sbjct: 115 CPQGPPGPPGPPGP 128
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +3
Query: 135 PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTP 287
P + P + C P GP G P+GP PG+P H P
Sbjct: 136 PINCPTAPSDCIKCAPGPAGPAGSAGPAG--PKGPDGRPGQPGSAGHPGAP 184
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
protein C08B11.3 protein.
Length = 1244
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 109 KRLQRESSAREQPEVQLSTPRPKHT 35
+++QRE+ REQ Q S P P HT
Sbjct: 548 QQVQRENLNREQYSTQSSQPHPPHT 572
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 207 PGRPSCLPRGPCSVPGRP 260
P +P C PRGP PGRP
Sbjct: 98 PAKPRC-PRGPPGPPGRP 114
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 168 CYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLPHFSTPLLLG 299
C C P+GP PG P GP +PG P + S P L G
Sbjct: 181 CIQC--PQGPQGPPGAVG--PCGPSGIPGLPGNPGYTSPPGLPG 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.125 0.352
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,891,338
Number of Sequences: 27780
Number of extensions: 216336
Number of successful extensions: 704
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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