Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5933
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   6.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.9  

>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 655 SSTISLKINSGTNQNSHNMKQSITN 729
           SST+S  +NS  N  SH    S+ N
Sbjct: 268 SSTLSKSVNSKINLKSHQSSSSVQN 292


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 117  YSNQSELTYQ*FFFVQMHRLPPLIIDDSLETLELV 13
            Y N ++ + +  + +Q ++ P LIID S + L+++
Sbjct: 3480 YKNLTDYSLENIYIIQENKSPLLIIDPSSQILDIL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,811
Number of Sequences: 5004
Number of extensions: 52819
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)