Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5928
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    26   3.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   3.4  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    26   4.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.0  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   7.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.9  

>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 310 WAVCSSAYKGNKKKYATNVQLNSTNLTL 393
           WAV + A  G  K+YAT + ++  N+ L
Sbjct: 59  WAVVTGATDGIGKEYATQLAMSGFNVVL 86


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 278 TSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG 138
           TS++P    S     NTL  P L  + S    +TV  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 281 MGNGNHSPSGGPYARLPTRAIKKNMLQMYN*TQPISP 391
           M + NHS     Y +L     +++++Q Y+ T+ I P
Sbjct: 1   MSDSNHSLDLHSYTQLEVERFRESLIQFYDKTKRILP 37


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 384  SHLAITSSGISLAKSSK--VVALFKLHRAL*LLYPXTPWSLALWMLRAIK 527
            S LA+ SS  ++ +  +  +VAL ++H+ L L    T +SL++  L  IK
Sbjct: 968  SKLAVVSSITNIVRQGRCTLVALVQMHKILALNCLITAYSLSVLHLDGIK 1017


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 310 T*W*VVTVAHGLQQCQGQSQAAAYRLILST 221
           T W +V++ HGLQ C   +   A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 568 HLFEDRRIPFSGIDLIALNIQRARDHGVXGYNNYRALCNLKRATTFDDLAR 416
           HLF  R    + +  +       R H     N++R LC+LK+  +  D+ R
Sbjct: 766 HLFSGRNEDIASLQCVLQFGSSERIHLEDIQNSHRYLCSLKKNNSQKDIHR 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,396
Number of Sequences: 5004
Number of extensions: 55484
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)