Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5928
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 30 1.5
12_02_1146 + 26458426-26458680 29 2.0
03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093 29 3.5
12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762... 28 4.6
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 4.6
09_02_0315 - 7179332-7179949 28 6.1
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 27 8.0
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 27 8.0
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +2
Query: 149 SGYGMSSPPRCSPSAMTCPSSNEACGEY*AVGSGLALPLALLKSMGNGNHSPS 307
+G G SP + SPS PS N GSG A P + S G GN PS
Sbjct: 79 NGKGYQSPYQPSPS----PSPNAPVSPSPVNGSGHASPKSPTPSCGKGNQPPS 127
>12_02_1146 + 26458426-26458680
Length = 84
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 252 KPLPTA*YSPQASFEEGHVIALGEHRGGELIP*PDGTWQKRSLETHCG*PQWLQV 88
K LP Y A+ E + LGE+ GG+ + +W S HC P WL++
Sbjct: 15 KALPKVVYGTAAAAESSCAVCLGEYGGGDEL--RVLSWCAHSFHRHCVDP-WLRL 66
>03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093
Length = 435
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 46 YHRTAHHRSRVHPYYLEPLRSSTV---RFQRSFLPRTIRLWNE-LPSTVFPERYDMSFFK 213
+HR HH R P L P+ + + R R+ R+ +E LP + E +D + +
Sbjct: 323 FHRGDHHHQRARPLLLRPIARAVLEASRMGRAPAGEQARIADEHLP---YIEHWDAMWHE 379
Query: 214 RGLWR 228
G WR
Sbjct: 380 LGRWR 384
>12_02_0196 -
15374814-15374997,15375304-15375547,15376035-15376237,
15377275-15377502,15377674-15377819,15378020-15378233,
15378410-15378543,15378986-15379135,15379892-15380155,
15380962-15381051
Length = 618
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 532 IDLIALNIQRARDHGVXGYNNYRALCNLKRATTFDDLARE 413
IDL AL + R R+ V YN +R L +++DL +
Sbjct: 470 IDLAALEVYRDRERSVPRYNEFRRRLFLIPIKSWEDLTSD 509
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 113 QCVSRDLFCHVPSGYGMSSPPRCSPSAMTCPSSNEACG 226
QCV++D + SPPRC S+ P E G
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRCPSSSCPEPQRQEFGG 144
>09_02_0315 - 7179332-7179949
Length = 205
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 238 GRQRLGSAPGIAEVHGQR*PLTIRWAVCSSAYKGNKKKYATNVQLNST 381
GR G A +AEV + P + W +CS Y+GN Y N++L T
Sbjct: 80 GRVPRGGAR-VAEVLIEPGPERVAWVLCSWGYEGN---YLANLKLFDT 123
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 278 SMGNGNHSPSGGPYARLPTRAIKKNMLQMYN*TQPIS--PCDNLIRNFSSQVIEGSGS 445
S+ +GN SPS P PT A + +L + P S P NL+++ + + EG+ +
Sbjct: 1115 SVTSGNPSPSPSPSPTAPTNAWRSPLLSSPSPIAPRSRAPGSNLMKDKAVKRTEGAAT 1172
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/69 (21%), Positives = 34/69 (49%)
Frame = +3
Query: 366 TIELNQSHLAITSSGISLAKSSKVVALFKLHRAL*LLYPXTPWSLALWMLRAIKSIPENG 545
T+ ++ S + ++ + + ++VV L +H + Y + ++RA K +PE
Sbjct: 674 TVAVSISDIMLSFAAYPIEIPAEVVFLHPVHNFALVAYDPSALGAGASVVRAAKLLPEPA 733
Query: 546 IRRSSNRWL 572
+RR + +L
Sbjct: 734 LRRGDSVYL 742
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,760
Number of Sequences: 37544
Number of extensions: 450308
Number of successful extensions: 1118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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