Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5927
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 32 0.072
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 31 0.22
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 28 1.2
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 28 1.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 3.6
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 27 3.6
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 3.6
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 4.7
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 26 6.3
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 6.3
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 25 8.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 8.3
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 8.3
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 32.3 bits (70), Expect = 0.072
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +1
Query: 55 RRDVNTQ-PSDSSSAHQELRLPQSPHSRRIKARH*QSSHSKPASQPQQDHRSRLTALPGP 231
RRD N PS S Q L P + + H S P+ QP + +R +LP
Sbjct: 641 RRDNNGSIPSKQPSDEQHLGKESLPSQQSTVSNH-HRKESIPSKQPTEGQHARQESLPSQ 699
Query: 232 TARNFTASSRRNS--SSQPTTGSST 300
T R+ S S QPT G T
Sbjct: 700 QTTE-TKHLRKESTPSKQPTEGQHT 723
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.17
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 344 TTGDTHAAFKLSLDS-PQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKNDT 520
++ T + LS S P TSSS+ T ++ S S ASSS+ +IS+ ++ + T
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 521 TFS 529
+ S
Sbjct: 285 STS 287
Score = 29.5 bits (63), Expect = 0.51
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 160 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTL 303
SS + +S S ++ PT+ + T SS +SSS PT+ SST+
Sbjct: 260 SSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI 307
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 30.7 bits (66), Expect = 0.22
Identities = 25/113 (22%), Positives = 48/113 (42%)
Frame = +1
Query: 46 GDLRRDVNTQPSDSSSAHQELRLPQSPHSRRIKARH*QSSHSKPASQPQQDHRSRLTALP 225
G L+ V++ S+++ P S + + SS S +S S ++
Sbjct: 121 GVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
Query: 226 GPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSR 384
++ + ++SS +SSS ++ SS+ V SS+H + S + SR
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = +1
Query: 28 VKTPKTGDLRRDVNTQP-SDSSSAHQELRLPQSPHSRRIKARH*QS----SHSKPASQPQ 192
+ +P DL T+P + +S A +++ H+++ K +H +S S+ +P SQPQ
Sbjct: 213 LSSPTKKDLIDFSETRPLAQASRATPDIK---EQHAKKPKRKHTRSTVPTSNVEPVSQPQ 269
Query: 193 QDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTH 315
+++ P+A+ R++S S T T V +
Sbjct: 270 PSPDKIVSSPNPPSAKREKKKRRKSSMSSSITTPPTAKVAN 310
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 681 DICSVDRRSECCCSELVYMRFILKMS*ARFRHLSI 577
D+C+V R CC+ +++ L F HL I
Sbjct: 448 DLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDI 482
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.5 bits (58), Expect = 2.1
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +1
Query: 31 KTPKTGDLRRDVN-TQPSDSSSAHQELRLPQSPHSRRIKAR-H*QSSHSKPASQPQQDHR 204
K P + + N T D +A PQ + I A+ + QSS + PA +++
Sbjct: 314 KLPSSANPNTPFNSTATVDVGAAGSHFPYPQPSNLDAINAKTYFQSSSNSPAPYVYRNN- 372
Query: 205 SRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSA 336
LP P+A +F SS R+ S P T S + + SA
Sbjct: 373 -----LP-PSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSA 410
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 220 LPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSRLTADF 399
LP P+A T+S N SS T S + H S + RH R + ++R
Sbjct: 91 LPQPSALALTSSKAANRSSTNTEKDSR-SIAHSTSRSRSTSPANRHRRKEKERTRSNHRH 149
Query: 400 EQHWRH 417
H RH
Sbjct: 150 GSHRRH 155
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 96 ASRTPATTIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQL 245
+S TP T+ P + + +TS +V+ I + S + + SW+ T +
Sbjct: 576 SSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPI 625
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 160 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAH 339
SS S P + + T++P P T+S+ NSS PTT +S T + G S+
Sbjct: 185 SSLSTPITPTVPPTSTSSTSIPIPPTS--TSSTDTNSSPLPTTSTSCTTSTSIPTGGSSS 242
Query: 340 M 342
+
Sbjct: 243 L 243
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 120 IPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRAS 224
+P +DK+ VP +A++ + G S+P AS
Sbjct: 66 LPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/43 (20%), Positives = 20/43 (46%)
Frame = +2
Query: 164 PTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPRPD 292
P R+ N+ + + P+ + A + HH +++ +PD
Sbjct: 677 PNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKPD 719
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +2
Query: 248 LPHHAATVHRSPRPDHQRLGSHISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAA 427
L H +HR+P+P +R + +L + T+ A K + PQ S +
Sbjct: 120 LLRHQQKIHRNPQPRRRRRSTTALPNPSLSNVSVSTTNLASKPVISLPQADSIDKFRYPK 179
Query: 428 FKLSLDSPQASSS 466
+L + A++S
Sbjct: 180 LHAALQAQLANNS 192
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 86 ESEGCVFTSRRRSPVLGVLTTKGKI 12
ESE + TS R+P LG+ TT ++
Sbjct: 1603 ESEHSILTSTTRTPSLGIYTTDAQL 1627
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 604 RHFQDKAHIYKFRTTTFGPSVYRANITRSVEDLSLKKKKK 723
+HF ++ HIY + PS IT E L L +K K
Sbjct: 415 KHFTEQRHIYGLKCLGISPSPLFNQITSIDEALQLWQKYK 454
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 118 QSPHSRRIKARH*QSSHSKPASQPQQDHRSRLT 216
+ P + RIKA + K A++P+ H+S +T
Sbjct: 100 EDPEAERIKAERVAEYNKKKAAKPKAVHKSLVT 132
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 6.3
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +1
Query: 55 RRDVNTQPSDSSSAHQELRLPQSPHSRRIKARH*QSSHSKPASQPQQDHRSRLTALPGPT 234
RR+ + S S LR +P S I S + P+S P + L++ P PT
Sbjct: 140 RRNSKKSSTLSRSISLHLRSESAPISLPIHLYKSYSYNHSPSSLPTVLNSQALSSPPVPT 199
Query: 235 ARNFTASSRRNSSS 276
+ +++R +SS+
Sbjct: 200 TPDEVSTNRLSSST 213
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 589 PESRLRHFQDKAHIYKFRTTTFGPSVYRANITRSVEDLSLKKK 717
PE LR FQ++ +Y+ + G S N+ R ++ +++ KK
Sbjct: 142 PEQSLRDFQERVRMYERKYEPLGKSEEDLNL-RYIKVINVGKK 183
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 163 SHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSS 297
S KPA+ + +T T N + + N+ S PTTG S
Sbjct: 227 SFGKPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGFS 271
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 146 HVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPR 286
H+ D P S R+ +RT++ S +L +RH + H++PR
Sbjct: 230 HMYD--PYTSPLRTPSRTLSRSSSHYLWVRHGKLTRSVSLLQHKTPR 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,439
Number of Sequences: 5004
Number of extensions: 62073
Number of successful extensions: 322
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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