Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5927
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical p...    31   1.1  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    30   1.9  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    29   3.4  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    29   3.4  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    29   4.4  
AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    29   4.4  
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    29   4.4  
AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    28   5.9  
U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 PAT--TIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 248
           PAT  TIP  S    +S+ +VP+   I +STG S PT     S  T +H
Sbjct: 525 PATSQTIPTSSTATVSSIPLVPRLPQIPSSTGSSTPTQAVKTS--TPIH 571


>Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 PAT--TIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 248
           PAT  TIP  S    +S+ +VP+   I +STG S PT     S  T +H
Sbjct: 522 PATSQTIPTSSTATVSSIPLVPRLPQIPSSTGSSTPTQAVKTS--TPIH 568


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +3

Query: 93  SASRTPATTIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQF 272
           SAS T +TT P  +   +   T    ++S  ++T     T   +W+Y T+   +  P + 
Sbjct: 122 SASTTLSTTQPQTTTTTTIPSTTTMTESSSTSTTASPTTTRIRTWTYTTRYPSVHDPNRH 181

Query: 273 IAAHDRIINAWGH 311
               DRI +   H
Sbjct: 182 RYGQDRIHHQHHH 194


>Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 PAT--TIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 248
           PAT  TIP  S    +S+ +VP+   I +STG S PT     S  T +H
Sbjct: 525 PATSQTIPTSSTATVSSIPLVPRLPQIPSSTGSSTPTQAVKTS--TPIH 571


>Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 PAT--TIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 248
           PAT  TIP  S    +S+ +VP+   I +STG S PT     S  T +H
Sbjct: 522 PATSQTIPTSSTATVSSIPLVPRLPQIPSSTGSSTPTQAVKTS--TPIH 568


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +3

Query: 93  SASRTPATTIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQF 272
           SAS T +TT P  +   +   T    ++S  ++T     T   +W+Y T+   +  P + 
Sbjct: 122 SASTTLSTTQPQTTTTTTIPSTTTMTESSSTSTTASPTTTRIRTWTYTTRYPSVHDPNRH 181

Query: 273 IAAHDRIINAWGH 311
               DRI +   H
Sbjct: 182 RYGQDRIHHQHHH 194


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 165 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 338
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 15  PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 165 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 338
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 169  SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT---TGSSTLGVTHLRRGSS 333
            S  AS   Q   S  TA PG +    T +S + SSS  T   TGS+T+  T + +GSS
Sbjct: 925  STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVATT-VTQGSS 981



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 118 QSPHSRRIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTA-SSRRNSSSQPTTGS 294
           Q P S R  A    SS ++P +       +  ++ P PTA + +  SS   +SS  T GS
Sbjct: 722 QPPASSRSTASQ-GSSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVGS 780

Query: 295 STLGVTHLRRGSS 333
           ST+G T     SS
Sbjct: 781 STMGSTQSSLPSS 793


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 335 HTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKN 514
           H  T   + ++   + + P TSS+      A  +S+ S Q SSS     L+S+    IKN
Sbjct: 56  HPITPSASTSSATSATEEPATSSAPQLASLA-PMSMSSEQPSSSFSSASLLSSSYETIKN 114

Query: 515 DTTFS 529
           +  FS
Sbjct: 115 EPEFS 119


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 335 HTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKN 514
           H  T   + ++   + + P TSS+      A  +S+ S Q SSS     L+S+    IKN
Sbjct: 56  HPITPSASTSSATSATEEPATSSAPQLASLA-PMSMSSEQPSSSFSSASLLSSSYETIKN 114

Query: 515 DTTFS 529
           +  FS
Sbjct: 115 EPEFS 119


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
 Frame = +1

Query: 145 ARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRR 324
           +R   +SHS   S+ ++  RSR  +L    AR  +    R+ S  P    S    +  RR
Sbjct: 283 SRRKSTSHSTSLSK-RRYLRSRSRSLSKSPARRRSRHLSRSGSRTPAQRHSRRSESTSRR 341

Query: 325 GSSAHM-------DYWRHARSIQAQSRLTADFEQHWRHARSIQAQPRLTAGFEQHWPLQA 483
            S  H           R  R  +++SR      ++W  ARS + + +  +     WPL  
Sbjct: 342 RSGRHSRSRSRSPPRKRPVRRSRSRSRSRTP-NRNWTRARS-RTRSQAKSSSTLTWPLSP 399

Query: 484 NLSTDNAN 507
           + S  N+N
Sbjct: 400 SRSRSNSN 407


>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 160 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 285
           +S   P+  P      R ++ PGP+  +   SS+ N  S PT
Sbjct: 690 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 731


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
            (dictyostelium suppressorof mek null) homolog protein 1,
            isoform a protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 160  SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 285
            +S   P+  P      R ++ PGP+  +   SS+ N  S PT
Sbjct: 926  NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 967


>AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical
           protein F45C12.8 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 340 MDYWRHARSIQAQSRLTADFE 402
           +D W+ AR+++A S++T  FE
Sbjct: 252 LDQWKRARTLRAHSKMTVPFE 272


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 118 QSPHSRRIKARH*QSSHSKPASQP--QQDHRSRLTALPGPTARNFTASSRRNSSSQPTTG 291
           QS +S   +  H QS H+ P   P  QQ HR      P P  +N T     N++S  TT 
Sbjct: 178 QSANSTLTRQSHSQS-HTLPHQMPQYQQYHRHATPPAPAPQHQNNTNYYTENTTS--TTS 234

Query: 292 SSTLGVTHLRRGSSAHMDY 348
                VT+    S+A+  Y
Sbjct: 235 YHPTSVTY--GSSNANSQY 251


>U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical
           protein T27F7.2b protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 87  IFSASRTPATTIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRAS 224
           IF  S +PA  I    ++ + S  +  +Q   A ST    PT+ AS
Sbjct: 332 IFKVSNSPAEEIENVLRNANQSQVLAAKQPKSAVSTSSMHPTNTAS 377


>U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical
           protein T27F7.2a protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 87  IFSASRTPATTIPAFSQDKSTSLTVVPQQASIAASTGPSQPTHRAS 224
           IF  S +PA  I    ++ + S  +  +Q   A ST    PT+ AS
Sbjct: 342 IFKVSNSPAEEIENVLRNANQSQVLAAKQPKSAVSTSSMHPTNTAS 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,366,195
Number of Sequences: 27780
Number of extensions: 384821
Number of successful extensions: 1533
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)