Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5926
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060971-1|AAL28519.1|  244|Drosophila melanogaster GM10122p pro...    29   7.2  
AF146797-1|AAD38010.1|  259|Drosophila melanogaster nucleotide e...    29   7.2  
AE013599-1966|AAF58196.1|  259|Drosophila melanogaster CG10215-P...    29   7.2  

>AY060971-1|AAL28519.1|  244|Drosophila melanogaster GM10122p
           protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 522 HSLYIFNKQNG--I*KSVRGEAAEFRADPTPRYIHRKTFYCSRFVFIKYFQM 373
           H + + +KQ G  I KS+     EFR D  P Y+  +T  C  ++ +KY  +
Sbjct: 46  HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRT-SCVLYLSLKYHNL 96


>AF146797-1|AAD38010.1|  259|Drosophila melanogaster nucleotide
           excision repair proteinERCC1 protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 522 HSLYIFNKQNG--I*KSVRGEAAEFRADPTPRYIHRKTFYCSRFVFIKYFQM 373
           H + + +KQ G  I KS+     EFR D  P Y+  +T  C  ++ +KY  +
Sbjct: 61  HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRT-SCVLYLSLKYHNL 111


>AE013599-1966|AAF58196.1|  259|Drosophila melanogaster CG10215-PA
           protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 522 HSLYIFNKQNG--I*KSVRGEAAEFRADPTPRYIHRKTFYCSRFVFIKYFQM 373
           H + + +KQ G  I KS+     EFR D  P Y+  +T  C  ++ +KY  +
Sbjct: 61  HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRT-SCVLYLSLKYHNL 111


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,523,771
Number of Sequences: 53049
Number of extensions: 494786
Number of successful extensions: 950
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)