Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5923
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    32   0.072
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.89 
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    27   2.1  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   2.7  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   8.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.3  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   8.3  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   8.3  

>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 217 NQEQVINPDGSYKWSYETGNGISAEEQGYIKNQ 315
           ++E+  NPD  ++W Y     I  + + Y KNQ
Sbjct: 79  DEEEEENPDAEFRWGYSARRRIRKQREEYFKNQ 111


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 227  RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRR 340
            R +  M HI  +  +EMEFQLK+    + R+ L  R R
Sbjct: 1044 RDAEGMSHIWQLRLREMEFQLKAEQEGRKRDKLGARER 1081


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 187 VHN---TEPIPILNQEQVINPDGSYKWSYETGNGISAE 291
           VHN    EP+P  N  +V       KW   +G+ I++E
Sbjct: 217 VHNEVMAEPLPHSNNREVTQATNQPKWQIHSGSDIASE 254


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 349 PVPSAPLVQVFPGFLCSPALQLKFHFLSRNSTYMIHRD**PVPD*VWE*VRYYG 188
           P P A  V + P     P ++  F  L  NST M H     +PD   + +R YG
Sbjct: 284 PGPDAQWVTILPARKLGPHMEHVFTNLQNNSTPMTHVRMIIIPDGGVKRLRIYG 337


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 321 YSLVFYVALLFS*NSISCLVTPLI*SIGIDDLFLIKY 211
           Y+L F+++  FS    S L+  L+    +  LF IKY
Sbjct: 9   YNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFIKY 45


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 445 TAPPVPAEIQKALDFLATLPPPAQ 516
           +APP+P+   KA    ++LPPPAQ
Sbjct: 156 SAPPIPS---KAPPIPSSLPPPAQ 176


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 314 REYLNKRRRRHRANINILRLTVKLYTSNIWRMK 412
           R  L K  R+H + + + +L +KL T N   MK
Sbjct: 825 RSILCKEARKHDSGLKLFKLGIKLCTRNEQIMK 857


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 246 SIGIDDLFLIKYGNRFGIMD 187
           S G+ D FL+KYG+   I D
Sbjct: 77  SQGLKDTFLVKYGDLINIQD 96


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 592 LNMPYLKLFRYNPYFIKDV*CIL 524
           L  P LK  +Y P FI+++ C++
Sbjct: 546 LGCPVLKHSKYAPLFIREIGCVI 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,354
Number of Sequences: 5004
Number of extensions: 57078
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)