Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5923
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    34   0.12 
AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical ...    30   1.9  
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    29   4.4  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    29   4.4  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    29   4.4  
U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction...    28   5.9  
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    28   5.9  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    28   5.9  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    28   5.9  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +1

Query: 76  SSFQQFQHQPNYLQQVQPINSLYAKXXXXXXXXXXXTVHNTEPIPILNQEQVINPDGSYK 255
           S  +QF H+P ++++  P+ + YA            T  +++P P + Q   I P  +  
Sbjct: 177 SVHEQFNHRPAHVEEEIPLENHYAPPPHQQIPDDLNTSFSSQPPPPIEQFGAIPPPNATI 236

Query: 256 WSYETGNGISAEEQGY 303
            S+ T N  S   Q +
Sbjct: 237 PSFPTSNAASPPVQEF 252


>AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical
           protein F14H12.3 protein.
          Length = 257

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 521 VSCAGGGSVAKKSRAFCISAGTGGAVGKWAPC 426
           V+C  GGS+ +  +  C S  TGG+V +  PC
Sbjct: 153 VTCGSGGSITRSRQCSCGSGCTGGSV-EQEPC 183


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 430 GAHLPTAPPVPAEIQKALDFLATLPPPAQDTRE 528
           G H P  PPVP  IQK        PP   DT+E
Sbjct: 654 GGHKPDFPPVP-RIQKPSTSSQPPPPEPMDTKE 685


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 430 GAHLPTAPPVPAEIQKALDFLATLPPPAQDTRE 528
           G H P  PPVP  IQK        PP   DT+E
Sbjct: 654 GGHKPDFPPVP-RIQKPSTSSQPPPPEPMDTKE 685


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 430 GAHLPTAPPVPAEIQKALDFLATLPPPAQDTRE 528
           G H P  PPVP  IQK        PP   DT+E
Sbjct: 654 GGHKPDFPPVP-RIQKPSTSSQPPPPEPMDTKE 685


>U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction
           molecule protein1, isoform b protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 227 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 388
           RS   +DHI     ++ +F+L+ R     +E +N+++    ++  + +LT  +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778


>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
           molecule protein1, isoform c protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 227 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 388
           RS   +DHI     ++ +F+L+ R     +E +N+++    ++  + +LT  +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
           molecule protein1, isoform d protein.
          Length = 1439

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 227 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 388
           RS   +DHI     ++ +F+L+ R     +E +N+++    ++  + +LT  +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
           molecule protein1, isoform a protein.
          Length = 1480

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 227 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 388
           RS   +DHI     ++ +F+L+ R     +E +N+++    ++  + +LT  +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/68 (30%), Positives = 25/68 (36%)
 Frame = -2

Query: 530  YSLVSCAGGGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGAVY*YW 351
            + L SC  G +       FCIS G  G  G    CG + F      T I  P G      
Sbjct: 2868 FPLASCCSGFTPQSSGGTFCISLGCLGGFG--GGCGSSCFFGLCLQTPIIQPIGC----- 2920

Query: 350  PCAVCASC 327
            PC +   C
Sbjct: 2921 PCGIGFMC 2928


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/68 (30%), Positives = 25/68 (36%)
 Frame = -2

Query: 530  YSLVSCAGGGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGAVY*YW 351
            + L SC  G +       FCIS G  G  G    CG + F      T I  P G      
Sbjct: 2868 FPLASCCSGFTPQSSGGTFCISLGCLGGFG--GGCGSSCFFGLCLQTPIIQPIGC----- 2920

Query: 350  PCAVCASC 327
            PC +   C
Sbjct: 2921 PCGIGFMC 2928


>Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical
           protein K07C10.1 protein.
          Length = 851

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 282 NSISCLVTPLI*SIGIDDLFLI 217
           NSI C+   LI  IG+DD FL+
Sbjct: 320 NSIMCITPFLILGIGVDDAFLL 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,651
Number of Sequences: 27780
Number of extensions: 338185
Number of successful extensions: 1042
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)