Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5923
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    90   2e-20
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    26   0.31 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    26   0.31 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    26   0.31 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    26   0.31 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    24   1.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    24   1.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    24   1.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    24   1.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 89.8 bits (213), Expect = 2e-20
 Identities = 44/98 (44%), Positives = 61/98 (62%)
 Frame = +1

Query: 211 ILNQEQVINPDGSYKWSYETGNGISAEEQGYIKNQGIPXXXXXXXXXXXXXXAPDGQVIH 390
           I +Q+  +N DG+Y  ++ET NGIS +E G  K   +               APDGQ + 
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQ--VDNETPVVSQGSDSYTAPDGQQVS 86

Query: 391 VQYLADENGFQPQGAHLPTAPPVPAEIQKALDFLATLP 504
           + Y+ADENGFQ QG+H+PTAPP+P EIQ+AL++ A  P
Sbjct: 87  ITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHP 124


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 456 RPSRDTKSSRLLGYATTSGTRH*RIHQTSLMKYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           R  R+T   R         +R  +I  +SL    ++ NN+KY    N+  K+ Y Y I+Y
Sbjct: 57  RKYRETSKERSRDRTERERSREPKII-SSLSNNTIHNNNYKYNYNNNNYNKKLY-YNINY 114


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 456 RPSRDTKSSRLLGYATTSGTRH*RIHQTSLMKYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           R  R+T   R         +R  +I  +SL    ++ NN+KY    N+  K+ Y Y I+Y
Sbjct: 57  RKYRETSKERSRDRTERERSREPKII-SSLSNNTIHNNNYKYNYNNNNYNKKLY-YNINY 114


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 456 RPSRDTKSSRLLGYATTSGTRH*RIHQTSLMKYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           R  R+T   R         +R  +I  +SL    ++ NN+KY    N+  K+ Y Y I+Y
Sbjct: 57  RKYRETSKERSRDRTERERSREPKII-SSLSNNTIHNNNYKYNYNNNNYNKKLY-YNINY 114


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 456 RPSRDTKSSRLLGYATTSGTRH*RIHQTSLMKYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           R  R+T   R         +R  +I  +SL    ++ NN+KY    N+  K+ Y Y I+Y
Sbjct: 57  RKYRETSKERSRDRTERERSREPKII-SSLSNNTIHNNNYKYNYNNNNYNKKLY-YNINY 114


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 549 KYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           KY  Y NN+    + N+  K+  +Y I+Y
Sbjct: 90  KYSNY-NNYNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 549 KYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           KY  Y NN+    + N+  K+  +Y I+Y
Sbjct: 90  KYSNY-NNYNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 549 KYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           KY  Y NN+    + N+  K+  +Y I+Y
Sbjct: 90  KYSNY-NNYNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 549 KYGLYLNNFKYGIFKNDERKRFYFYYISY 635
           KY  Y NN+    + N+  K+  +Y I+Y
Sbjct: 90  KYSNY-NNYNNNNYNNNNYKKLQYYNINY 117


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 422 SHKVPTCQQHRPSQPRYKKL*TSWLRYHLRHKTLENTSDILDEVRIVPKQF*IW 583
           SH VP  ++ R +  RY+ L      ++ R+ T     +I   + +  +Q  IW
Sbjct: 2   SHCVPERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW 55


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 237 IDDLFLIKYGNRF 199
           IDD FL K G+RF
Sbjct: 165 IDDHFLFKEGDRF 177


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 237 IDDLFLIKYGNRF 199
           IDD FL K G+RF
Sbjct: 181 IDDHFLFKEGDRF 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,354
Number of Sequences: 438
Number of extensions: 4132
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)