Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5922
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   0.80 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   0.80 
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    24   7.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    24   9.8  

>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 130 KSYKLAKSQ*NLKRYLTKFDHVIVYDS 50
           K YK+ K++  + + + K+DHV++Y S
Sbjct: 526 KVYKVLKNKDKISKKIHKWDHVVLYGS 552


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 257  SWSRESNTHIKISLSIKYMDFLYGYKIS 340
            SW R  NT +K SLS  +  FL  Y  S
Sbjct: 1373 SWERIRNTPLKRSLSTTFYSFLISYNDS 1400


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 133 CKSYKLAKSQ*NLKRYLTKFDHVIVYDSIYCIRY 32
           CK+ KL +   N KR+         YD  Y I Y
Sbjct: 155 CKNKKLLREHMNNKRHFRLDPKSSEYDEFYIINY 188


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 117 SLYDLQCCSGFTDPMSILAAPVRFAGHLKRTLLFLTPTKIL 239
           ++YD     G+T   S++AA + F+   K+ + + T  +++
Sbjct: 200 AVYDHVRIDGYTISSSVIAAKLSFSVRAKKKIKWATSRRLI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,130
Number of Sequences: 5004
Number of extensions: 31697
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)