Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5922
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821...    27   5.5  

>10_08_0883 +
           21279913-21280235,21281066-21281327,21281998-21282199,
           21282289-21282436,21282541-21283084
          Length = 492

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 14  AIPSHIVPDAVNAIIDYDMIEFG*IALQILLALCKLIRFTMLL 142
           AIP  I+P  V+  + + M  FG +AL +L++   L+    +L
Sbjct: 374 AIPFFIIPRTVHPFMGWSMYLFGALALGVLVSNAFLLPLLAVL 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,432
Number of Sequences: 37544
Number of extensions: 188881
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)