Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5922
         (396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075234-1|AAL68101.2|  541|Drosophila melanogaster AT19549p pro...    28   5.2  
X90986-1|CAA62473.1|  535|Drosophila melanogaster pipsqueak prot...    27   6.8  
AE013599-1144|AAX52711.1|  535|Drosophila melanogaster CG2368-PL...    27   9.0  

>AY075234-1|AAL68101.2|  541|Drosophila melanogaster AT19549p
           protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 105 WLFASLYDLQCCSGF--TDPMSILAAPVRFAGHLKRTLLFLTPTKILIINAPAAGVGSPT 278
           +L  + +D Q    F  T+       P  FA  +    +   PT +L +   A GV  P 
Sbjct: 42  YLDVNKHDKQAAENFEGTETPCFDVPPSLFADKVPMDKIVFLPTSMLPMGFEAGGVFGPG 101

Query: 279 LI*RLAYPL 305
           ++ R +YP+
Sbjct: 102 ILTRRSYPI 110


>X90986-1|CAA62473.1|  535|Drosophila melanogaster pipsqueak
           protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 164 YTSCTRPLCWAFKTNIIISHPNKDSHH*RPRSWSRESN 277
           + +C    CWA   +   SHP+   HH  P+S SR ++
Sbjct: 478 WIACRTAACWACPWDSWTSHPS-HQHHLPPQSPSRSTS 514


>AE013599-1144|AAX52711.1|  535|Drosophila melanogaster CG2368-PL,
           isoform L protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 170 SCTRPLCWAFKTNIIISHPNKDSHH*RPRSWSRESN 277
           +C    CWA   +   SHP+   HH  P+S SR ++
Sbjct: 480 ACRTAACWACPWDSWTSHPS-HQHHLPPQSPSRSTS 514


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,702
Number of Sequences: 53049
Number of extensions: 337682
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)