Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5922
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 208 HYYFSPQQRFSSLTPPQL 261
           H++ SP Q  SS  P Q+
Sbjct: 630 HFHQSPSQNHSSAVPDQM 647


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 197 FKTNIIISHPNKDSHH*RPRSWSRESNTHIKISLS 301
           F+++I  S   KDS        S + NTH +++ S
Sbjct: 662 FRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQS 696


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 148 KPEQHCKSYKLAKSQ*NLKRYLTKFDHVIVYDSIYCIRY 32
           KP Q   +    KS+     YL +F   ++ D  YC RY
Sbjct: 439 KPRQGDGAAVKRKSREGSTTYLWEFLLKLLQDREYCPRY 477


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 223  PQQRFSSLTPPQLE*GVQHSYKD 291
            PQQ+    + PQ    V H+Y+D
Sbjct: 1280 PQQQQLPPSSPQPRLTVNHAYRD 1302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,431
Number of Sequences: 438
Number of extensions: 2050
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)