Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5921
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   2.3  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   3.1  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    25   3.1  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   4.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   5.4  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    24   7.1  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    24   9.4  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    24   9.4  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    24   9.4  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 194 LLLLIEDCQPPSVPVSCLV*CSAKWSAGLLGDLVGPTFGAPALH 63
           L + I+  +PP  P   L   ++     LL   +   FGAP LH
Sbjct: 362 LQIYIQSPRPPLTPKRLLAGAASMLIGSLLISFILVAFGAPLLH 405


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 81   WGSGTTLDDEFGNFKSFCAC 22
            W S   LDD +G+   FC C
Sbjct: 994  WPSVARLDDAYGDKNLFCTC 1013


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 256 ARSAPPQGDATTPRRTDPKSS 194
           A S+ P   A TP R+ PKSS
Sbjct: 79  AESSKPSSGAATPTRSAPKSS 99


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 265 FPEARSAPPQGDATTPRRTDPKSSYY 188
           FP   + PP+       R DP+SS Y
Sbjct: 82  FPNQHNLPPETQYAITHRFDPESSTY 107


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  GLKISEFIVQCSAGAPNVGPTRSPS 108
           GL  S   +  S+ +P+ GP RSPS
Sbjct: 59  GLSFSPGYISPSSQSPHHGPVRSPS 83


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 262  PEARSAPPQGDATTPRRTDPKSSYYC*SKTASLHRFRSVAWCSAAL 125
            PE ++A  +G  +TPR T  K      S+++++++  +++  SA L
Sbjct: 1224 PEGQTASREGVLSTPRSTRKKRKLGRKSQSSNVNKEVAISEVSATL 1269


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 34  GLKISEFIVQCSAGAPNVGPTRSPS 108
           GL+ S+FI++  +  P VGP R  S
Sbjct: 864 GLQQSKFIIRNDSLHPKVGPPRRQS 888


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 71  ALHWTMNSEILSPFVHV 21
           A  WT  SEI  P+ HV
Sbjct: 258 AKRWTFESEIKRPYFHV 274


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 175 TASLHRFRSVAWCSAALSGPLVCSEIWSDQRLGLRHYTG 59
           T++LH  R ++ CS  L   ++ S I    +  L  Y+G
Sbjct: 188 TSNLHHIRIISKCSLKLKSMVLVSMIIPSIKQTLDFYSG 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,922
Number of Sequences: 5004
Number of extensions: 30621
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)