Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5921
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233 30 0.55
01_02_0022 + 10290033-10290407,10290497-10290848,10290923-102910... 30 0.55
12_01_1029 + 10547341-10548108 30 0.72
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 28 2.2
01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328 28 2.9
03_05_0344 - 23316919-23317314,23317474-23317868,23320889-233213... 27 5.1
03_03_0070 - 14256143-14257492 27 5.1
04_01_0491 - 6459906-6460457 27 6.7
12_01_0198 - 1461305-1463812 26 8.9
11_01_0651 - 5272442-5272718,5274026-5274081 26 8.9
04_03_0398 - 15393102-15393378,15394685-15394740 26 8.9
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 26 8.9
01_04_0056 + 15476868-15476896,15477581-15478259 26 8.9
>03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233
Length = 305
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 235 LAGARNGPRGNPSTRTCSSPPIKAGVMHCGM 327
LA A GP G+P+T T + P+ GV G+
Sbjct: 66 LAAAGEGPSGSPATTTATEDPVLVGVTDEGV 96
>01_02_0022 +
10290033-10290407,10290497-10290848,10290923-10291070,
10291145-10291225,10291651-10291822,10292120-10292158,
10292384-10292543,10292676-10292779,10292979-10293278
Length = 576
Score = 30.3 bits (65), Expect = 0.55
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 383 RLTIGRIGYRAPPRACVQSIPQCITPALI 297
R +G +G RAPP CV S P CI +L+
Sbjct: 174 RAGLGALGVRAPPPVCVLS-PLCILDSLV 201
>12_01_1029 + 10547341-10548108
Length = 255
Score = 29.9 bits (64), Expect = 0.72
Identities = 22/77 (28%), Positives = 28/77 (36%)
Frame = +1
Query: 34 GLKISEFIVQCSAGAPNVGPTRSPSKPADHLALHYTRQLTGTDGGWQXXXXXXXXXXGRC 213
G + +V SAGA TR A+ H+ Q GT GG + G C
Sbjct: 150 GTPVPGEVVATSAGAQG---TRQRRAEAESWRQHHGCQRGGTSGGLRGKQRVGRRRGGGC 206
Query: 214 VVGSSRPLAGARNGPRG 264
G G R+G G
Sbjct: 207 DAGGGDGATGRRSGEEG 223
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 223 SSRPLAGARNGPRGNPSTRTCSSPPIKAGVMHCGMDCTQARGGAR 357
++ PLA A P P+ C SPP++ + H + C RGG+R
Sbjct: 5 TTSPLAAAAARPCAFPTPWRCRSPPLRR-LPH--VSCQANRGGSR 46
>01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328
Length = 115
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 205 GRCVVGSSRPLAGARNGPRGNPSTRTCSS 291
GRC SSR L G NG T+T SS
Sbjct: 53 GRCGAASSRALTGTENGKGEWRGTKTTSS 81
>03_05_0344 -
23316919-23317314,23317474-23317868,23320889-23321384,
23322346-23322366
Length = 435
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 151 SVAWCSAALSGPLVCSEIWSDQRLGLR 71
+V CS+A G V S++WS Q LR
Sbjct: 283 NVVGCSSAADGRKVWSDLWSTQAKALR 309
>03_03_0070 - 14256143-14257492
Length = 449
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +1
Query: 211 CVV--GSSRPLAGARNGPRGNPSTRTCSS--PPIKAGVMHCG 324
C+V G RPL+ NP T+ C+S PP G++ CG
Sbjct: 132 CLVPAGVVRPLSRIDRYVLVNPLTKACTSVPPPATRGIVICG 173
>04_01_0491 - 6459906-6460457
Length = 183
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 256 ARSAPPQGDATTPRRTDPKSS 194
A + PP D TPRR P+ S
Sbjct: 33 AAAEPPSSDGATPRRVRPRKS 53
>12_01_0198 - 1461305-1463812
Length = 835
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 114 WFARRSGRTNVWGS 73
WFAR +GRT VW +
Sbjct: 77 WFARAAGRTVVWSA 90
>11_01_0651 - 5272442-5272718,5274026-5274081
Length = 110
Score = 26.2 bits (55), Expect = 8.9
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = +1
Query: 91 PTRSPSKPADHLALHYTRQLTGTDGGWQXXXXXXXXXXGRCVVGSSRPLAGARNGPRGNP 270
P+R S AD L+ + LT + W V G++RPL GAR +P
Sbjct: 7 PSRDSSGLADVYWLNMSSTLTASQSAWTRGSRNCHRPL---VTGTARPLHGAR-----SP 58
Query: 271 STRTCSSPPIKAG 309
R S P ++AG
Sbjct: 59 LRR--SKPAVQAG 69
>04_03_0398 - 15393102-15393378,15394685-15394740
Length = 110
Score = 26.2 bits (55), Expect = 8.9
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = +1
Query: 91 PTRSPSKPADHLALHYTRQLTGTDGGWQXXXXXXXXXXGRCVVGSSRPLAGARNGPRGNP 270
P+R S AD L+ + LT + W V G++RPL GAR +P
Sbjct: 7 PSRDSSGLADVYWLNMSSTLTASQSAWTRGSRNCHRPL---VTGTARPLHGAR-----SP 58
Query: 271 STRTCSSPPIKAG 309
R S P ++AG
Sbjct: 59 LRR--SKPAVQAG 69
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 26.2 bits (55), Expect = 8.9
Identities = 21/81 (25%), Positives = 29/81 (35%)
Frame = +1
Query: 61 QCSAGAPNVGPTRSPSKPADHLALHYTRQLTGTDGGWQXXXXXXXXXXGRCVVGSSRPLA 240
Q + GAP GP++ P + H GGWQ GR G
Sbjct: 19 QQATGAPGRGPSQRPERAQQH-----------GGGGWQPANPQYAQQAGR--GGGQHQGR 65
Query: 241 GARNGPRGNPSTRTCSSPPIK 303
G R RG P++ P++
Sbjct: 66 GGRYQGRGGPTSHQPGGGPVE 86
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 67 SAGAPNVGPTRSPSKPADHLALHYTRQLTGT 159
+A P P++PA HL LH+ Q +GT
Sbjct: 84 TAATPKPNTPPDPTRPAPHLTLHH--QYSGT 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,367
Number of Sequences: 37544
Number of extensions: 278583
Number of successful extensions: 838
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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