Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5918
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    27   2.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.2  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    25   9.5  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   9.5  

>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -3

Query: 511 SYTYPINCFNYEHKSWLASIKCSTDTQYYYTRVIC 407
           SY YP + F   H  W       TDT Y+     C
Sbjct: 193 SYFYPQDSFLVSHAEWQDGNGIWTDTDYFAAMADC 227


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 293 PVKFAPSERDFNYCTQFIKCL 355
           PV F P + DFN   +F+ CL
Sbjct: 522 PVGFCPLQLDFNNWPKFLCCL 542


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 427  YYTRVICH*NTKVSS-EEDSVLKFLQTFDELSTIIKVTF 314
            Y+T+V CH N+ ++S   DS+ +F   F E+  +    F
Sbjct: 1222 YFTQVSCHENSIIASFALDSLRQFSMQFLEIEELSHFKF 1260


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 106 LPCVSVCVKAELHSL 62
           +PC+S CV AEL  L
Sbjct: 97  IPCISDCVMAELEKL 111


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 303 LLHPNVTLIIVLSSSNVCKNFKTESSSE 386
           L  PN T  I L++SNV  NF  ++ ++
Sbjct: 361 LYSPNATFSISLNASNVRTNFSQKTDTK 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,619
Number of Sequences: 5004
Number of extensions: 37018
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)