Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5917
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    72   6e-14
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    28   0.89 
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   6.3  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   6.3  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
 Frame = -1

Query: 470  EFSSASEWREPCAACVLTELTCRVCN---------HXXXXXXXXXXXXDTERPACLCPTC 318
            EFS+ + +R P     L ++ C+ C          H                    C +C
Sbjct: 2048 EFSTQAVFRYPSRRLSLDQIPCKQCGVHQDFDLCLHEHLWPTRDDMGTLVFSDGWSCSSC 2107

Query: 317  GTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTK 138
               YD    E  L++ +  +   Y LQDLICS+C  VK+ +L   C C+G++ L +  TK
Sbjct: 2108 NLVYDRWVFEETLVDNLYHQLTLYQLQDLICSKCKTVKQWSLKERCSCSGEWVLQLSPTK 2167

Query: 137  IKDQLMTFKTIAEYYQMPLLLEQI 66
             ++ L  ++++A++Y+  +L   +
Sbjct: 2168 FREMLNVYQSVADFYEFSILQNSV 2191


>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 326 PTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKR 201
           PT     D +E   R +ET N+  +A+ +Q LI  R H  ++
Sbjct: 101 PTWDLERDLKE-RMRSLETQNQNAIAFYIQQLISERAHSTEK 141


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 155 MVPVTKIKDQLMTFKTIAEYYQMPLLL 75
           ++P   I  Q+  F + A+YYQ P  L
Sbjct: 158 LIPSGPILSQIREFLSTADYYQRPFFL 184


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 204 FYLVTSATYKILQRIRHRTFVHRLD 278
           F + T    KILQR+RH+  V  L+
Sbjct: 317 FPITTVREVKILQRLRHKNIVRLLE 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,609
Number of Sequences: 5004
Number of extensions: 38791
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)