Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5917
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    64   6e-11
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369...    28   4.9  
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612...    28   6.5  
03_01_0506 + 3816676-3817971                                           28   6.5  
02_05_0748 - 31463559-31464764                                         28   6.5  

>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 37/140 (26%), Positives = 61/140 (43%)
 Frame = -1

Query: 470  EFSSASEWREPCAACVLTELTCRVCNHXXXXXXXXXXXXDTERPACLCPTCGTAYDNQEI 291
            EF+  +++++PCA+  L  + C  CN               +   C  P CG  Y  +++
Sbjct: 2063 EFAPEAQFQDPCASFTLPNVICSYCNDCRDLDLCRDSTLQGQEWRCAVPQCGQPYHREQM 2122

Query: 290  EWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTKIKDQLMTFK 111
            E  L            LQDL+C RC QVK  +LS  C C G F      ++   ++  F 
Sbjct: 2123 ENAL------------LQDLVCLRCRQVKAAHLSEQCSCGGAFRCKEESSQFLSKMRVFL 2170

Query: 110  TIAEYYQMPLLLEQIDFNLK 51
             +A   +  LL + + + L+
Sbjct: 2171 NVAVSQKFELLQDVVQWILE 2190



 Score = 31.1 bits (67), Expect = 0.69
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 570  FVNAVCKVFSLDPTLDEEITLVRRNLLRLI 481
            F+  +C V +LD  +  +I  +R+NLL+L+
Sbjct: 2030 FIKHICAVLALDQNVQHDILRMRKNLLKLV 2059


>09_02_0057 -
           3697255-3698116,3698191-3698351,3698442-3698636,
           3698728-3699126,3699208-3699477,3700102-3700695
          Length = 826

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 583 PGPPLRQRRLQSVLPRSDLRRRDYAGAAQPAPS 485
           P P  ++ R  S  PR  + RRD A    P PS
Sbjct: 86  PPPAAKRERSSSRAPRDSVERRDSADREAPPPS 118


>12_02_0333 +
           17660454-17660502,17660587-17660704,17661181-17661255,
           17661341-17661412,17661606-17661643,17661758-17661791,
           17662396-17662519,17663334-17663417,17663991-17664056,
           17664110-17664316
          Length = 288

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 308 YDNQEIEWRLIETMNKRTMAYTLQDLICSRC 216
           YD +E+    +E +  R   YT +D+IC RC
Sbjct: 259 YDLEEVP--PLEELEARAAPYTCRDIICCRC 287


>03_01_0506 + 3816676-3817971
          Length = 431

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 323 TCGTAYDNQEIEWRLIETMNK 261
           TCG  YD +   WR+IE M++
Sbjct: 297 TCGEEYDLKRRSWRVIENMSE 317


>02_05_0748 - 31463559-31464764
          Length = 401

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 323 TCGTAYDNQEIEWRLIETMNK 261
           TCG  YD ++  WR+IE M++
Sbjct: 267 TCGEEYDLEKGTWRVIENMSE 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,109
Number of Sequences: 37544
Number of extensions: 266086
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)