Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5917
         (593 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p pro...   120   2e-27
AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA...   120   2e-27
AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymera...   111   5e-25
AE014298-979|AAF46221.2| 1027|Drosophila melanogaster CG14431-PA...    29   6.3  

>AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p
           protein.
          Length = 711

 Score =  120 bits (288), Expect = 2e-27
 Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
 Frame = -1

Query: 473 GEFSSASEWREPCAACVLTELTCRVCNHXXXXXXXXXXXXDTER--PACLCPTCGTAYDN 300
           GEFS  +EW +PC + ++ E+ C+ CNH              +   P  LC  C  AYDN
Sbjct: 566 GEFSDLAEWEDPCDSHIINEVICKACNHCRDLDLCKDKHRAMKDGVPVWLCAQCYVAYDN 625

Query: 299 QEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTKIKDQLM 120
           +EIE R+++ + ++ M+Y LQDL CSRC ++KRENL+  C CAG+F  ++    I+  L 
Sbjct: 626 EEIEMRMLDALQRKMMSYVLQDLRCSRCSEIKRENLAEFCTCAGNFVPLISGKDIQTLLG 685

Query: 119 TFKTIAEYYQMPLLLEQI 66
           TF  +A  ++M LL + +
Sbjct: 686 TFNKVAANHKMQLLQQTV 703



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 579 GPPFVNAVCKVFSLDPTLDEEITLVRRNLLRLI 481
           G   +  + K  S+D TL E+I  +RRN+LRL+
Sbjct: 531 GLELIRTLIKALSVDKTLAEQINELRRNMLRLV 563


>AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA
            protein.
          Length = 2236

 Score =  120 bits (288), Expect = 2e-27
 Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
 Frame = -1

Query: 473  GEFSSASEWREPCAACVLTELTCRVCNHXXXXXXXXXXXXDTER--PACLCPTCGTAYDN 300
            GEFS  +EW +PC + ++ E+ C+ CNH              +   P  LC  C  AYDN
Sbjct: 2091 GEFSDLAEWEDPCDSHIINEVICKACNHCRDLDLCKDKHRAMKDGVPVWLCAQCYVAYDN 2150

Query: 299  QEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTKIKDQLM 120
            +EIE R+++ + ++ M+Y LQDL CSRC ++KRENL+  C CAG+F  ++    I+  L 
Sbjct: 2151 EEIEMRMLDALQRKMMSYVLQDLRCSRCSEIKRENLAEFCTCAGNFVPLISGKDIQTLLG 2210

Query: 119  TFKTIAEYYQMPLLLEQI 66
            TF  +A  ++M LL + +
Sbjct: 2211 TFNKVAANHKMQLLQQTV 2228



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 579  GPPFVNAVCKVFSLDPTLDEEITLVRRNLLRLI 481
            G   +  + K  S+D TL E+I  +RRN+LRL+
Sbjct: 2056 GLELIRTLIKALSVDKTLAEQINELRRNMLRLV 2088


>AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymerase
            epsilon protein.
          Length = 2220

 Score =  111 bits (268), Expect = 5e-25
 Identities = 50/136 (36%), Positives = 80/136 (58%)
 Frame = -1

Query: 473  GEFSSASEWREPCAACVLTELTCRVCNHXXXXXXXXXXXXDTERPACLCPTCGTAYDNQE 294
            GEFS  +EW +PC + ++ E+ C+ CNH              ++   +   C  AYDN+E
Sbjct: 2083 GEFSDLAEWEDPCDSHIINEVICKACNHCRDLDLCK------DKHRAMKDGCYVAYDNEE 2136

Query: 293  IEWRLIETMNKRTMAYTLQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTKIKDQLMTF 114
            IE R+++ + ++ M+Y LQDL CSRC ++KRENL+  C CAG+F  ++    I+  L TF
Sbjct: 2137 IEMRMLDALQRKMMSYVLQDLRCSRCSEIKRENLAEFCTCAGNFVPLISGKDIQTLLGTF 2196

Query: 113  KTIAEYYQMPLLLEQI 66
              +A  ++M LL + +
Sbjct: 2197 NKVAANHKMQLLQQTV 2212



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 579  GPPFVNAVCKVFSLDPTLDEEITLVRRNLLRLI 481
            G   +  + K  S+D TL E+I  +RRN+LRL+
Sbjct: 2048 GLELIRTLIKALSVDKTLAEQINELRRNMLRLV 2080


>AE014298-979|AAF46221.2| 1027|Drosophila melanogaster CG14431-PA
           protein.
          Length = 1027

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 593 ELGTGAPPSSTPSAKCSPSIRP*TKRLR 510
           E G G PP+ TP    +PS  P + R R
Sbjct: 353 ESGEGIPPTETPEPPAAPSFAPGSPRYR 380


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,606,775
Number of Sequences: 53049
Number of extensions: 458949
Number of successful extensions: 1357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)