Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5916
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   5.2  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   5.2  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    26   6.9  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.2  
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    25   9.2  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -1

Query: 426  STRISATESSITSEAQTAAAAKGESTTET-----ESIRRVSAAKGNAASRKAT*GSRMTT 262
            ST  SAT SS +S A  + +    S+  T      S   ++AA    +S  +   + +T 
Sbjct: 965  STAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASVTD 1024

Query: 261  NSNSSVSAA 235
            +S SSV+ A
Sbjct: 1025 SSTSSVATA 1033


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 627 ECLLFVLWLDRNYGGSRSGRSWGLDEDDLVMFLGWSHSRDTRKSLLN 487
           EC +FVL L ++ G    GRS      DL   L + H   + K L N
Sbjct: 5   ECTVFVLDLGKDMGTCHHGRS----HSDLEWTLSYFHDELSHKFLAN 47


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 465 SRTSPRTS*AKTSSYPCCGSTPETLQDHLHQGPNSSH 575
           SRTS   S   TSSYP       + + HL+  P + H
Sbjct: 811 SRTSTPFS-ESTSSYPLVSGNLSSCETHLNGSPQNGH 846


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 676 PTSAPTQPSKPEVYFIKYQTQKESGG 753
           P S P  PS P+V   +  T K +GG
Sbjct: 311 PVSLPPTPSSPKVGVYRPMTSKSNGG 336


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 732 NPKGIWWCYWR 764
           NPK ++W YWR
Sbjct: 91  NPKDVFWVYWR 101


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 555 DEDDLVMFLGWSHSRDTRKSL-LNWFWGRYVNIDVFLYKRSTR 430
           D DDL  +LG    R+  +++ L W+ G   N ++F+ +++ R
Sbjct: 241 DNDDLDFYLGRLEKREGAEAIRLRWY-GNMDNNNIFVERKTHR 282


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -1

Query: 423 TRISATESSITSEAQTAAAAKGESTTETESIRRVSA--AKGNAASRKAT*GSRMTTNSNS 250
           T ++AT      ++        E   +T+S R  +A  AK  + +  +  G + T N NS
Sbjct: 186 TGLNATNLKAVQKSVNKLVVNKEQQEKTQSKRGAAAPAAKPVSTAAPSKKGGKPTVNVNS 245

Query: 249 SVSAADRGRAE 217
             + AD+   E
Sbjct: 246 KKTVADKSAYE 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,068
Number of Sequences: 5004
Number of extensions: 46308
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)