Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5916
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    32   0.53 
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    31   0.92 
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    31   0.92 
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    30   1.6  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    29   3.7  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   8.6  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   8.6  
AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical...    28   8.6  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -1

Query: 438 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTN 259
           ST  +T  S TES+ TS   T   +  ESTTE+ S    S     + +   T  +  +T+
Sbjct: 189 STTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTT-ESTTESTTESTSTSTD 247

Query: 258 SNSSVSAA 235
           S ++ S +
Sbjct: 248 STTTESTS 255



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -1

Query: 438 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTN 259
           +T  ST  S TES+ TS   T   +  ESTTE+ S    S    + ++   +  +  TT 
Sbjct: 209 TTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTSTSTDSTTTESTTE 268

Query: 258 SNS 250
           S +
Sbjct: 269 STT 271



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 438 STRVSTRISATESSITSEAQTAAAAKGESTTETES 334
           ST  ST  + TES+ TS   T   +  ESTTE+ S
Sbjct: 241 STSTSTDSTTTESTSTSTDSTTTESTTESTTESTS 275


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -1

Query: 438 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTN 259
           +T  ++    +E++  + A TAA    ES T TES   V+  +G+A +  AT    +TT 
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTTT 240

Query: 258 SNS 250
             S
Sbjct: 241 EGS 243


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -1

Query: 438 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTN 259
           +T  ++    +E++  + A TAA    ES T TES   V+  +G+A +  AT    +TT 
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTTT 240

Query: 258 SNS 250
             S
Sbjct: 241 EGS 243


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -1

Query: 438 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTN 259
           +T  ++    +E++  + A TAA    ES T TES   V+  +G+A +  AT    +TT 
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTTT 240

Query: 258 SNS 250
             S
Sbjct: 241 EGS 243


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -1

Query: 438 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTN 259
           +T  ++    +E++  + A TAA    ES T TES   V+  +G+A +  AT    +TT 
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTTT 240

Query: 258 SNS 250
             S
Sbjct: 241 EGS 243


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -1

Query: 411 ATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSNSSVSAAD 232
           A + +  SEA +   A  ESTTE+      SA K              T N  ++VS A 
Sbjct: 18  AADGTTKSEASSTTVATSESTTESTKTTTASAIKETVKEEVKEKEGPETRNETAAVSRAK 77

Query: 231 R 229
           R
Sbjct: 78  R 78


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -1

Query: 408 TESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSNSSVSAADR 229
           TES +  +      A GE+  E E  +R     G    +K     +  T S S  SA ++
Sbjct: 447 TESEVAIKTDYWMKANGEAMKEIEEKKRERELNGGVKKKKPRSNRKTDTTSTSVASAVEK 506

Query: 228 GRAE 217
             AE
Sbjct: 507 VIAE 510


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -1

Query: 426 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 283
           +T  SAT S++TS+  +++A  G ST  T++ +  S+   +  S  +T
Sbjct: 457 ATGSSATGSTVTSDVASSSATGGSSTNATDTTQ--SSTDASTVSTSST 502


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -1

Query: 426 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 283
           +T  SAT S++TS+  +++A  G ST  T++ +  S+   +  S  +T
Sbjct: 460 ATGSSATGSTVTSDVASSSATGGSSTNATDTTQ--SSTDASTVSTSST 505


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +3

Query: 438  SSCTETHLCSRTSPRTS*AKTSSYPCCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRR 617
            S+ T T + S  SP +S A+ SS P   ST    Q    Q P S+       + P+T+  
Sbjct: 937  SAATVT-VSSSQSPTSSPAQQSSTPAGSSTVTVQQSSSFQSPQSTTQIGSSTTVPSTQAP 995

Query: 618  EDT 626
              T
Sbjct: 996  SST 998


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 128 WYSPVWLWPMAALNLQWDTATPLP 199
           W   +W++PMA + L W   T LP
Sbjct: 98  WNQLLWIYPMALVQLIWVPDTELP 121


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 507 YPCCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTK 611
           YP CGS  E ++   +   N+   YCP   Y   K
Sbjct: 222 YPNCGSIQEVIEFIENGNRNAQPKYCPDEIYKLMK 256


>AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical
           protein C46E10.9 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 438 SSCTETHLCSRTSPRT-S*AKTSSYPCCGSTPETLQDHLHQGPNSSHSYCPHNS 596
           SS   +   +R SP T S +++SS     S   TLQD + + PN   + CP  S
Sbjct: 329 SSAPASTCSTRWSPMTVSTSESSSTSESSSGMPTLQDPIRRCPNEPVAQCPSRS 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,365
Number of Sequences: 27780
Number of extensions: 262645
Number of successful extensions: 1111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)