Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5915
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   0.59 
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   1.8  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   4.1  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   4.1  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    24   7.2  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    24   9.6  

>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 185 PDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFCAEVLKRDPTPFHAPQP 33
           P+    TGR    H ++ T  + ++  R        EV+  D +PF +P P
Sbjct: 168 PENNPHTGRSALLHRVLDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSP 218


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 155  RTRHLIVPTGAERELHARAGHPAFCAEVLKRD 60
            R RH +V  G +REL  RA    +   V KRD
Sbjct: 1034 RYRHPVVSCGRKRELILRALCSGYFTNVAKRD 1065


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 311 SAFAGTRPDDKTGFHLRENPEGRHFGRYTVGGA 213
           S F   + D + G  L+ + +GRH     +GGA
Sbjct: 65  SDFKPVKADREDGVALKRHLKGRHMQMIAIGGA 97


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 206 PPCTAPPPDRQSSTGRPRTRHLIVPTG 126
           PP T P          P T H ++PTG
Sbjct: 22  PPLTIPHTVSAEGLATPNTPHALLPTG 48


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 262 GKIPKDVISGDTPWAAHRSHL 200
           GK   D IS   PW  +R HL
Sbjct: 585 GKCTTDHISAAGPWLKYRGHL 605


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 316 ESPPSLVPVLMIRRDFIFGKIPKDV-ISGDTPWAAHRSHLAPPHHR 182
           ES   LV ++    D I     KDV +    PW  H  +LAP + +
Sbjct: 352 ESQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEK 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,791
Number of Sequences: 5004
Number of extensions: 39272
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)