Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5914
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 31 0.083
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 30 0.11
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 29 0.25
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 27 1.0
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 26 1.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 1.8
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 26 2.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 4.1
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 25 4.1
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 5.5
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 24 7.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 24 7.2
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 9.6
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 30.7 bits (66), Expect = 0.083
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 299 YTDVSVKSVYFVVRCTIRCGGHRRVAPPSTSPGRRIRRGTPSV 171
Y++ ++ +Y ++ + C H RV + GRRIR P V
Sbjct: 59 YSEYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRV 101
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 30.3 bits (65), Expect = 0.11
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 299 YTDVSVKSVYFVVRCTIRCGGHRRVAPPSTSPGRRIRRGTPSV 171
Y++ ++ +Y ++ + C H RV + GRRIR P V
Sbjct: 59 YSEYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRV 101
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 29.1 bits (62), Expect = 0.25
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 243 ASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSRSQASLLRPRGLR 386
ASYS+ D + R GTP + R+RRS SQ++ + P G+R
Sbjct: 432 ASYSSYEDSEIQNDDETRTVGTPTETISVVRLRRSSSQSN-IEPNGVR 478
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 1.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 225 NPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSRSQASL 365
N + A+ + DKV F A VRV T +L A +R R + +A +
Sbjct: 230 NANILIANTAMDTDKVKVFGARVRVDTTGKL-AELERAEREKMKAKV 275
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 26.2 bits (55), Expect = 1.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 234 VSTASYSTPNDKVNGFNANVRVRGTPRLSARQD--RVRRSRSQASLLRPRGLR 386
VS S+ T D+ FNA + VRG+ L R VR S + S R + +R
Sbjct: 104 VSYRSHMTLEDENQIFNAEMAVRGSQSLQRRPTGRSVRGSMRRLSSHRSKSMR 156
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 162 TLSNRRSPAPDTPSRACTGWCNPTVSTASYSTPNDKVN 275
+ S+ P P S++ + ST+S+STPN KV+
Sbjct: 248 SFSSNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVS 285
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 177 RSPAPDTPSRACTGWCNPTVSTASYSTPN 263
R+P P R+ T NP++S S ST N
Sbjct: 129 RNPQPRRRRRSTTALPNPSLSNVSVSTTN 157
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 201 SRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSRSQASL 365
S T N TV +++ STP + +VRV GT R S + V R S +
Sbjct: 66 SEIVTSTANSTVVSSALSTPKIDDAQNSDDVRVDGTRRSSRAKRPVYRDFSYTEI 120
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 16 PISSSPLSVWRLPPRGLISGPESQNRICR 102
P+ S+P+S+W+ P G P+ +I +
Sbjct: 214 PLRSNPVSLWKSLPEGETFTPQEAAKILK 242
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 13 WPISSSPLSVWRLPPRGLISGPESQNRICRA 105
+P+SS P+S L P+ L P+ +NR A
Sbjct: 109 FPLSSPPISEPDLRPQALNETPDYRNRFLGA 139
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 298 YEGHRVCQPGKIAYAVPVAKLAYSA 372
YEG V +P K Y P+A L +S+
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSS 590
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 7 TQWPISSSPLSVWRLPPRGLISGPESQNRIC 99
TQ S S+ PP + S PES+ R C
Sbjct: 400 TQGQPESPSKSILLRPPPSIASSPESKRRKC 430
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 23.8 bits (49), Expect = 9.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 159 ETLSNRRSPAPDTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPR--LSARQD 332
ET+S++ + + TP+ P+ + A STP+ + N T + +A+
Sbjct: 528 ETVSSKAARSATTPAYVGGATKTPSTTKAVESTPSTLPTSASTNAAATTTTKKPKAAKST 587
Query: 333 RVRRSRSQAS 362
VR S AS
Sbjct: 588 AVRDDVSSAS 597
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 168 SNRRSPAPDTPSRACTGWCNPTVSTASYSTPNDKV 272
+NR P P T S+ + + PTVS S S + V
Sbjct: 1016 ANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSV 1050
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,619
Number of Sequences: 5004
Number of extensions: 25477
Number of successful extensions: 82
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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