Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5914
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0038 + 20121924-20122080,20123182-20123843 30 0.74
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 29 0.97
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 29 1.7
10_06_0080 + 10441055-10443856 28 2.2
05_01_0219 + 1638318-1638553,1639186-1639336,1639504-1639611,163... 27 3.9
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668... 27 5.2
02_03_0068 + 14711891-14712418 27 5.2
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 27 5.2
12_02_1061 - 25756366-25757567,25758692-25758797 27 6.9
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 27 6.9
06_03_0220 + 18276641-18276915,18278445-18278676 27 6.9
02_05_0592 - 30210219-30210757,30210898-30210919 27 6.9
01_06_0950 - 33265653-33265802,33265905-33265961,33266046-332661... 27 6.9
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 27 6.9
01_01_1103 - 8744873-8745724 26 9.1
>03_05_0038 + 20121924-20122080,20123182-20123843
Length = 272
Score = 29.9 bits (64), Expect = 0.74
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 376 RGRSRLAWLRERRTRSCRADRRGVPRTRTLALNPFTLSLGVL 251
RG R+ W +ER+ R+C G R ++ A NP + SLG++
Sbjct: 162 RGGGRVVWHQERQPRTC-----GYVRAKSRADNPPSTSLGMV 198
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 29.5 bits (63), Expect = 0.97
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 16 PISSSPLSVWRLPPRGLISGPESQNRICR 102
P+SSSP +W P +GL+ SQ RI R
Sbjct: 425 PVSSSP-QMWPTPDQGLLHSSSSQLRIVR 452
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 183 PAPDTPSRACTGWCNPTVSTASYSTPNDKVN 275
P P TPS A T C PTV+ A P + +
Sbjct: 74 PPPRTPSAASTSSCRPTVAPAVPLPPGSQTS 104
>10_06_0080 + 10441055-10443856
Length = 933
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 107 RARHIRFWLSGPLMRPRGGNRQTESGEELIGHCVY 3
R + IR+W++ + RGGN E EE + V+
Sbjct: 451 RKKLIRWWVAEGFIEERGGNTMEEVAEEYLKELVH 485
>05_01_0219 +
1638318-1638553,1639186-1639336,1639504-1639611,
1639755-1639847,1639973-1640056,1640314-1640384,
1640461-1640529,1640686-1640779,1640897-1640986,
1641082-1641162,1641341-1641433,1641650-1641730,
1641815-1641884,1642022-1642110
Length = 469
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 230 RVAPPSTSPGRRIRRGTPSVA 168
RVAP + GRR RRG P VA
Sbjct: 11 RVAPDGGAAGRRRRRGRPVVA 31
>09_03_0167 +
12965030-12965356,12966100-12966387,12966704-12966826,
12967229-12967611,12967863-12968190,12968324-12968353,
12968837-12968989,12969510-12969815
Length = 645
Score = 27.1 bits (57), Expect = 5.2
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +3
Query: 36 LCLAVAASGSHQRSREPKSDMPSTNAPHXXXXXXXXXXXKAETLSNRRSPAPDTPSRACT 215
L L S+ + + P S P+ H E + PAPDTP RA T
Sbjct: 563 LQLGSTEESSNGKCQVPASFFPARPYRHGVPLLLNIRNPMVEHAARLVWPAPDTPVRATT 622
Query: 216 G 218
G
Sbjct: 623 G 623
>02_03_0068 + 14711891-14712418
Length = 175
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 260 RCTIRCGGHRRVAPPSTSPGRRIRRGTP 177
R IR GG SPGRR R G+P
Sbjct: 66 RRAIRGGGEEEKEEEEESPGRRRRNGSP 93
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -2
Query: 101 RHIRFWLSGPLMRPRGGNRQTESGE----ELIGHCV 6
R +R W++ +RPR G+ E G+ ELI C+
Sbjct: 475 RLVRLWVAEGFVRPRRGSTMEEVGQGYLKELISRCM 510
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 180 SPAPDTPSRACTGWCNPTVSTASYSTPNDKVNG 278
+P P P R P VSTAS T ND G
Sbjct: 402 APLPSLPVRMPVATYGPPVSTASAPTSNDTSAG 434
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +1
Query: 169 ATEGVPRRIRRPGLVLGGATRRCPPHRIVHXXXXXXXXXXXSVYEG 306
+T P + R L++G +CPPH I +Y G
Sbjct: 311 STISFPLEVARKRLMVGALQGKCPPHMIAALAEVIQEEGLPGLYRG 356
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 26.6 bits (56), Expect = 6.9
Identities = 19/59 (32%), Positives = 21/59 (35%)
Frame = +3
Query: 174 RRSPAPDTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSR 350
R P P RA T WC P +S A P G R Q+R RSR
Sbjct: 37 RPPPLPVAHRRAHTPWC-PPLSVADARMPPRPPPSEAVQPAAAGRARAGRAQERRERSR 94
>02_05_0592 - 30210219-30210757,30210898-30210919
Length = 186
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 248 RCGGHRRVAPPSTSPGRRIRRGTPS 174
R GG+RRVAPP + + G P+
Sbjct: 121 RAGGNRRVAPPPPAAATPLTPGGPT 145
>01_06_0950 -
33265653-33265802,33265905-33265961,33266046-33266111,
33266252-33266317,33266752-33267217,33267313-33267566
Length = 352
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 180 SPAPDTPSRACTGWCNPTVSTASYST 257
+P+P T R GW +P + A+ ST
Sbjct: 21 APSPLTADRVSCGWTSPAAAAAAEST 46
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 180 SPAPDTPSRACTGWCNPTVSTASYSTPNDKVNGFN---ANVRVRGTPRLSARQDRV 338
+P P P PT S S + P+D G+N ++ TP++ +D V
Sbjct: 384 APPPSRPPPTLAAKKGPTESNTSNAYPHDHNQGYNPFISSTNTSKTPKIDELEDFV 439
>01_01_1103 - 8744873-8745724
Length = 283
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 251 IRCGGHRRVAPPSTSPGRRIRRGTPSVA 168
+R GG RR +T+ GRR G P +A
Sbjct: 183 VRGGGQRRGGAAATAGGRRKASGAPPLA 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,748,191
Number of Sequences: 37544
Number of extensions: 213788
Number of successful extensions: 867
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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