Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5914
         (387 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.        30   2.3  
AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens ...    30   2.3  
BC036533-1|AAH36533.1|  748|Homo sapiens junctophilin 3 protein.       29   5.2  
AB042640-1|BAB11987.1|  620|Homo sapiens junctophilin type3 prot...    29   5.2  
AB042636-1|BAB11983.1|  748|Homo sapiens junctophilin type3 prot...    29   5.2  

>BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 51  AASGSHQRSREPKSDMPSTNAPHXXXXXXXXXXXKAETLSNRRSPAP--DTPSRACTGWC 224
           ++S S   S  P S  PS++               +   S+  SP+P   +PS + +   
Sbjct: 156 SSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTS 215

Query: 225 NPTVSTASYSTPN 263
           +P+ S+ S S+P+
Sbjct: 216 SPSTSSPSSSSPS 228


>AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35107 fis, clone PLACE6006871, moderately
           similar to SUPPRESSOR PROTEIN SRP40. ).
          Length = 258

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 51  AASGSHQRSREPKSDMPSTNAPHXXXXXXXXXXXKAETLSNRRSPAP--DTPSRACTGWC 224
           ++S S   S  P S  PS++               +   S+  SP+P   +PS + +   
Sbjct: 157 SSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTS 216

Query: 225 NPTVSTASYSTPN 263
           +P+ S+ S S+P+
Sbjct: 217 SPSTSSPSSSSPS 229


>BC036533-1|AAH36533.1|  748|Homo sapiens junctophilin 3 protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 AHYDFEYSVHDEQSGDIKQQKESRAGYAVQGLYWVVQPDG 235
           AH+  + SV +E+ GDI+   E RAG   +  +   Q  G
Sbjct: 499 AHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 538


>AB042640-1|BAB11987.1|  620|Homo sapiens junctophilin type3
           protein.
          Length = 620

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 AHYDFEYSVHDEQSGDIKQQKESRAGYAVQGLYWVVQPDG 235
           AH+  + SV +E+ GDI+   E RAG   +  +   Q  G
Sbjct: 371 AHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 410


>AB042636-1|BAB11983.1|  748|Homo sapiens junctophilin type3
           protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 AHYDFEYSVHDEQSGDIKQQKESRAGYAVQGLYWVVQPDG 235
           AH+  + SV +E+ GDI+   E RAG   +  +   Q  G
Sbjct: 499 AHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 538


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,979,916
Number of Sequences: 237096
Number of extensions: 1084563
Number of successful extensions: 3051
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3049
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)