Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5914
(387 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 30 0.65
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 30 0.65
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 29 1.1
AC006634-2|AAF39794.2| 179|Caenorhabditis elegans Hypothetical ... 29 1.5
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 27 3.5
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 3.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 3.5
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 3.5
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 27 4.6
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 27 4.6
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 27 4.6
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 27 4.6
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 26 8.1
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 29.9 bits (64), Expect = 0.65
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 189 PDTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQ 329
P TP + + W NP S P+ + G A VR+ R RQ
Sbjct: 330 PRTPPASTSSWMNPEASGVGQG-PSTSIGGGKARVRISTPERWELRQ 375
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 29.9 bits (64), Expect = 0.65
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 189 PDTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQ 329
P TP + + W NP S P+ + G A VR+ R RQ
Sbjct: 330 PRTPPASTSSWMNPEASGVGQG-PSTSIGGGKARVRISTPERWELRQ 375
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 47 GCRLGVSSAVPRAKIGYAEHECPAHYDFEYSVHDEQSGDIKQQKESRAGYAVQGLYWVVQ 226
GC + + + Y+ YDF S+ E +K+Q E A V LY + +
Sbjct: 146 GCSQPLHTLMVMCFAAYSMRNTQEKYDFGQSLKQETYEALKEQLEKLACKIVNNLY-LSE 204
Query: 227 PDGVHRI 247
PDG ++
Sbjct: 205 PDGPFQV 211
>AC006634-2|AAF39794.2| 179|Caenorhabditis elegans Hypothetical
protein F35F11.2 protein.
Length = 179
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 24 FFAALCLAVAASGSHQRSREPKSDMPST 107
F+ A C + ++G QRS PKSD T
Sbjct: 141 FYMAYCRDLVSAGDQQRSGSPKSDSTRT 168
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 162 TLSNRRSPAPDTPSRACTGWCNPTVSTASYSTPNDKVNG 278
T S +PAP TP+RA P V T + TP K G
Sbjct: 65 TKSTVDTPAPKTPTRAAK---TPVVKTPAAKTPAKKAPG 100
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/76 (23%), Positives = 29/76 (38%)
Frame = +3
Query: 30 AALCLAVAASGSHQRSREPKSDMPSTNAPHXXXXXXXXXXXKAETLSNRRSPAPDTPSRA 209
+ L + A GS S PS+ +P +++ S +P+ TP+ +
Sbjct: 368 STLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGS 427
Query: 210 CTGWCNPTVSTASYST 257
P STAS T
Sbjct: 428 SQSTITPEGSTASSPT 443
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/76 (23%), Positives = 29/76 (38%)
Frame = +3
Query: 30 AALCLAVAASGSHQRSREPKSDMPSTNAPHXXXXXXXXXXXKAETLSNRRSPAPDTPSRA 209
+ L + A GS S PS+ +P +++ S +P+ TP+ +
Sbjct: 575 STLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGS 634
Query: 210 CTGWCNPTVSTASYST 257
P STAS T
Sbjct: 635 SQSTITPEGSTASSPT 650
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/76 (23%), Positives = 29/76 (38%)
Frame = +3
Query: 30 AALCLAVAASGSHQRSREPKSDMPSTNAPHXXXXXXXXXXXKAETLSNRRSPAPDTPSRA 209
+ L + A GS S PS+ +P +++ S +P+ TP+ +
Sbjct: 575 STLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGS 634
Query: 210 CTGWCNPTVSTASYST 257
P STAS T
Sbjct: 635 SQSTITPEGSTASSPT 650
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 192 DTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSRSQA 359
D + + G +PT + S +P D V +++V TP S+ D R+ R ++
Sbjct: 203 DFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRS 258
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 192 DTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSRSQA 359
D + + G +PT + S +P D V +++V TP S+ D R+ R ++
Sbjct: 203 DFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRS 258
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 192 DTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSRSQA 359
D + + G +PT + S +P D V +++V TP S+ D R+ R ++
Sbjct: 203 DFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRS 258
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 192 DTPSRACTGWCNPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRSRSQA 359
D + + G +PT + S +P D V +++V TP S+ D R+ R ++
Sbjct: 108 DFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRS 163
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 225 NPTVSTASYSTPNDKVNGFNANVRVRGTPRLSARQDRVRRS 347
NPTV T+ Y + NG NAN + P+ + + R S
Sbjct: 123 NPTVFTSGYIGEQSETNG-NANGQSASRPQANRNRQRASSS 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,326,608
Number of Sequences: 27780
Number of extensions: 162151
Number of successful extensions: 520
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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