Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5913
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical
           protein Y68A4A.6 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/59 (23%), Positives = 34/59 (57%)
 Frame = -3

Query: 547 FKWQTYLTINFIFFFLH*YVLIRILEQRYIFLYFHRSLKRVQMFMLLRHSEFVENNIQR 371
           FK + ++ I F  FFL  Y+L R++++ + FL F  +++    ++    + + +N++ +
Sbjct: 86  FKEKFFIVIGFGLFFLSFYIL-RMVQELFHFLLFLLAIRNTFKYLFPFRTLYSQNSVPK 143


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical protein
            C01B9.1b protein.
          Length = 1671

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 1    SYARIKLYVFHFILLNNFKNCSTHE 75
            S  RI++ +F    L+N +NC THE
Sbjct: 992  SVERIRITIFFRYFLHNHENCRTHE 1016


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
           protein C01B9.1a protein.
          Length = 1601

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   SYARIKLYVFHFILLNNFKNCSTHE 75
           S  RI++ +F    L+N +NC THE
Sbjct: 922 SVERIRITIFFRYFLHNHENCRTHE 946


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 13  IKLYVFHFILLNNFKNCSTH 72
           I LY F F + N F+NCSTH
Sbjct: 270 IALYRFLFQMTNIFENCSTH 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,655
Number of Sequences: 27780
Number of extensions: 363736
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)