Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5912
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   0.91 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   6.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   6.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    24   6.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   8.5  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    24   8.5  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 295 CPQWLQVVWMNFTPVSAGAMVKTRCWYHLEQFL 197
           C + + +   NF P   G  V   CW+H+++ L
Sbjct: 21  CMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDL 53


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 272 YYLKPLRTSTVRLQRSFLPRT 334
           YY  PL  ++V L  S LPR+
Sbjct: 40  YYASPLHANSVSLPPSHLPRS 60


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 236 GKNEMLVSSRTIPQS-TPHGTYGIKYRGNRSPSTNPEAPYILLVKFNRVYIT-HSTAND 66
           G    +  + T P++ TP+  Y ++      P  +P A YI+     R+ +  H  A D
Sbjct: 371 GVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGD 429


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 250 SAGAMVKTRCWYHLEQFL 197
           S GAM+  RCW   E FL
Sbjct: 251 SNGAMMMERCWLGPEHFL 268


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 200 PQSTPHGTYGIKYRGNRSPSTNPEAPYILLVKFNRVYITHS 78
           P S PHG Y      +   S  P  P  + + F+  +  HS
Sbjct: 55  PVSIPHGRYTWSTSPDTDSSHLPSTPPTVDIPFHHPHTIHS 95


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 215 SSRTIPQSTPHGTYGIKYRGNRSPSTNPEAPYIL 114
           ++R+ P S       I  + NRS ST    PY++
Sbjct: 39  NTRSYPYSVSRNYSFILNKSNRSKSTAASPPYVI 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,891
Number of Sequences: 5004
Number of extensions: 33699
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)