Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5912
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1494 + 37756872-37757137,37757318-37757407,37758392-377584...    27   3.4  
10_01_0144 - 1705429-1706250                                           27   4.5  
01_01_0375 + 2922994-2923602,2923701-2923772,2923834-2923908           27   4.5  
02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753     27   6.0  
04_03_0202 + 12637271-12637499,12638217-12638821                       26   7.9  
02_03_0358 - 18081487-18082140                                         26   7.9  

>01_06_1494 +
           37756872-37757137,37757318-37757407,37758392-37758443,
           37759226-37759315,37759520-37759642,37759752-37759850
          Length = 239

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +2

Query: 113 IVCMEPLGLLRDFGYLCILYRMFHGECSEELFEMIPASRFYHRTGRHRSKVHPYYLKPLR 292
           +V +   G L +  +L  L R F G   E  F   PAS  YHR       +H  YL    
Sbjct: 39  VVSVLAYGFL-ELHFLGDLLRGFRGGRVELTFH--PASEIYHRVASKCRSLHGRYLATPW 95

Query: 293 TSTVRLQRSFL 325
            ++  LQ  FL
Sbjct: 96  LASPHLQTLFL 106


>10_01_0144 - 1705429-1706250
          Length = 273

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 271 WMNFTPVSAGAMVKTRCWYHLEQFLRALP 185
           W+  TP++        CWY L   L  +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269


>01_01_0375 + 2922994-2923602,2923701-2923772,2923834-2923908
          Length = 251

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 6   ISSLMLFSLSNDYDLFYKEPIVGSRVSDIDSVK 104
           +SSL+   +SN  +L  KE +VGS  +  DSV+
Sbjct: 32  LSSLLCLPVSNIINLLTKEHMVGSIANVFDSVE 64


>02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753
          Length = 232

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 248 GRCDGKNEMLVSSRTIPQSTPHGTYGIKYRGNRSPSTNP 132
           GRCDG+    + SR  P+ +   T G+      +P   P
Sbjct: 50  GRCDGRRHRCLLSRGWPRRSSPSTVGLDAAQQSAPVHTP 88


>04_03_0202 + 12637271-12637499,12638217-12638821
          Length = 277

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 295 CPQWLQVVWMNFTPVSAGAMV 233
           C ++ QVVW N T V  G +V
Sbjct: 233 CTRYTQVVWRNTTQVGCGRIV 253


>02_03_0358 - 18081487-18082140
          Length = 217

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 350 HSIAGWYVAKKISANALWMSAVASGSMD-ELYSGVGRCDGKNEMLVSSRTIPQS 192
           HS+  + V ++ SA  L +S++ S +MD ++Y G G  + + E  V  +   QS
Sbjct: 107 HSLPSFVVEQERSAVVL-LSSLPSFAMDRDVYGGGGEAEAEEEQGVGGKQQQQS 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,031
Number of Sequences: 37544
Number of extensions: 219007
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)