Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5912
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   8.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 144 GTSVTSVFYTVCSMGSALRNCS 209
           G  V SVF ++  MG A+ N +
Sbjct: 128 GCDVYSVFGSISGMGQAMTNAA 149


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 144 GTSVTSVFYTVCSMGSALRNCS 209
           G  V SVF ++  MG A+ N +
Sbjct: 128 GCDVYSVFGSISGMGQAMTNAA 149


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 192 HSPWNIRYKIQR*PKSL 142
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -2

Query: 334 GTWQKRSLQTHCGCPQWLQVVWMNFTPVSAG 242
           G W  R +        WL    ++F P+S G
Sbjct: 134 GRWVTRRIAVAGIAVVWLLAGLISFVPISLG 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,689
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)