Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5911
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    31   0.15 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    30   0.34 
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   3.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   7.3  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.3  
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    25   9.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   9.6  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 646 QEAYPVKLKEIHVINASPLVDVVFNIVKPFLKEKMKKRV 762
           Q+ YP ++ + +VINA       FN++K FL E   K++
Sbjct: 197 QDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKI 235


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 747  FFFKEWFYNVEYDIHEGRCVDNVYFLQFHWISFLYTNEEF 628
            F F   FY++ Y   +   + NV  L F W+ FLY    F
Sbjct: 1076 FLFLLSFYSLIYGAEKPYLIHNVVGLYFFWLLFLYAKNGF 1115


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 631 FFICIQEAYPVKLKEI-HVINASPLVD 708
           F+IC +E  P K  +I H+   +PL D
Sbjct: 36  FYICNEEGCPAKFSKISHIFKKTPLFD 62


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +1

Query: 475  NQLNDVFKLAMMIGDVRLREEVE-GIAGDVYVLDASILMPSHLAKISPAVLKKFFICIQE 651
            N +  +F   +M G +  RE+   GIA  V   + S L P  + +I+  +++     I E
Sbjct: 2242 NSILPIFLYGLMHGTMDQREQSALGIADIVLKTEPSKLRP-FVTQITGPLIR----IIGE 2296

Query: 652  AYPVKLKEIHVINASPLVDVVFNIVKPFLKE 744
             +PV++K   +   + ++  +   ++PFL +
Sbjct: 2297 RFPVEVKCAILYTLNIILSKISTFLRPFLPQ 2327


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 197 HSLIAAKSCALVLTSSFNSSRIFFHSSPEG*IRVAVDAISLLQYVTIQFGTSCF 36
           H  I A S  L+L   +  +R FF SS    IR++ + I LL   ++    +C+
Sbjct: 117 HLEITAMSEQLIL-QKYQKNRFFFMSSINALIRISRNCIKLLFKNSLVLLAACY 169


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 603 QDFTSSAEEILHLYTGSLSSETEGNTRYQRISPRGCRI 716
           QDF    + I   YTG+L++  + ++   R SP  C I
Sbjct: 14  QDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTI 51


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 357 NQTRANGPAE*SPRTYTPWLDASRSTSNHRQSTGQE 464
           NQT+ + P + S  T     D S++  NH QS  +E
Sbjct: 295 NQTQLSSPNKSSSPTSIEISDFSKNNENHDQSENKE 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,329
Number of Sequences: 5004
Number of extensions: 79137
Number of successful extensions: 233
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)