Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5909
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   2.4  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   4.2  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   5.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   5.5  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    23   9.6  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.6  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 181 VSPLFYFYKLNIYFIYVIIFLNVNVVYV 98
           V+ +++F K +IYF  +++ + +   YV
Sbjct: 394 VAMVYFFIKFDIYFTLIVLIMTLCYCYV 421


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 250 KPLRITTKRYSKKKKLEGGPGTQF 321
           KP     KR ++KKK   GP  QF
Sbjct: 33  KPPASKKKRKNRKKKKNNGPSEQF 56


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 166 KKGEKQVNH*NENN*KKT*KQHH*ITSLKPLRITTKRYSKKKKLEGG 306
           K   K      E + K+  + H     L+  +ITTK YS+K K  GG
Sbjct: 69  KNSGKDTQFYEEPSSKQDIELHKLHEKLRNGQITTKEYSEKSKELGG 115


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 110 CCLCHSNYNNFLCLQ 66
           CC+C SNY ++ C++
Sbjct: 312 CCICQSNY-HYACVE 325


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 238 ITSLKPLRITTKRYSKKKK 294
           +TSLKP  +TT  YS   K
Sbjct: 734 LTSLKPENVTTGMYSDTSK 752


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 119 KCQCCLCHSNYNNFLCLQIF 60
           K  CC  +SNYN  L   +F
Sbjct: 80  KMNCCNFYSNYNILLVSSLF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 907,812
Number of Sequences: 5004
Number of extensions: 10838
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)