Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5907
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   2.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   7.1  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    20   7.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    20   7.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    20   7.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    20   7.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   7.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 166 YFYKLNIYFIYVIIFLNVNVVYVILITI 83
           +F+ + +  +Y+ IF N +V+Y I I++
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISL 156


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 166 YFYKLNIYFIYVIIFLNVNVVYVILITI 83
           +F+ + +  +Y+ IF N +V+Y I I++
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISL 156


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 36  KYRQQYLIKYLQTQ 77
           +Y+QQ + KYLQ Q
Sbjct: 247 QYQQQIVGKYLQQQ 260


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 98  HSNYNNFLCLQIFN 57
           H+N NN+  LQ +N
Sbjct: 91  HNNNNNYKKLQYYN 104


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 98  HSNYNNFLCLQIFN 57
           H+N NN+  LQ +N
Sbjct: 91  HNNNNNYKKLQYYN 104


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 98  HSNYNNFLCLQIFN 57
           H+N NN+  LQ +N
Sbjct: 91  HNNNNNYKKLQYYN 104


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 98  HSNYNNFLCLQIFN 57
           H+N NN+  LQ +N
Sbjct: 91  HNNNNNYKKLQYYN 104


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 98  HSNYNNFLCLQIFN 57
           H+N NN+  LQ +N
Sbjct: 324 HNNNNNYKKLQYYN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,795
Number of Sequences: 438
Number of extensions: 862
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)