Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5906
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0588 + 19036509-19039235                                         28   5.2  
01_05_0090 + 18038219-18038421,18039365-18039488,18040229-180403...    28   5.2  
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931...    27   9.1  
07_03_0351 + 17082571-17083087,17083135-17083148                       27   9.1  

>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 286 ANTNPSKN--HASQNLPPDRKRDPLTRSGEKLSALCLSVGLHAEPFVASDG 432
           AN  P +    A++  PP   RD  T SG +  A+  S G  ++  VASDG
Sbjct: 435 ANVLPKRRMVSATRRFPPGCGRDVKTGSGLEFMAVDASCGGVSKEVVASDG 485


>01_05_0090 +
           18038219-18038421,18039365-18039488,18040229-18040311,
           18040401-18040473,18040584-18040688,18040803-18040853,
           18041705-18041781,18041879-18042037,18043548-18043692,
           18043776-18043884,18043959-18044107,18044175-18044258,
           18044784-18044825,18045811-18046014
          Length = 535

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 303 QEPCFAESTTGSETRPTDKIRRETQCAVSECWFT 404
           Q P   +S +G E   T+ + R   C   ECW T
Sbjct: 218 QGPACKDSLSGKEGSETNSVTRSFGCGGIECWRT 251


>10_06_0154 -
           11291630-11292106,11292192-11292457,11293027-11293131,
           11293210-11293234,11293349-11293465,11293528-11294041,
           11295524-11295578,11295980-11296060,11296129-11296219,
           11296321-11296417,11297465-11297529,11297950-11298108,
           11298208-11298455,11300667-11300835
          Length = 822

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 162 ERMVPCRTDSRLRHSEYMNGRNNELYVPQ 76
           E   PC T S L   EY+  +N+EL +PQ
Sbjct: 111 EGQTPCGTRSGLMMYEYLIEQNDELNLPQ 139


>07_03_0351 + 17082571-17083087,17083135-17083148
          Length = 176

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 392 LRHSALSFSPDLVSGSRFRSGGRFCEAWFLLGFVL 288
           LR   L+    +V   R+R+GG  C+ W  LGFV+
Sbjct: 121 LRPGWLADGGGVVYLGRWRTGGIECDVWDKLGFVV 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,721,486
Number of Sequences: 37544
Number of extensions: 230265
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)