Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5906
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   1.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.5  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 124 SEPGVGTTRDHALR*PFNVSWAALRAIKTLT 216
           S PGVG     + R  F  +WA+L+  K L+
Sbjct: 135 SFPGVGVIDFESWRPIFRQNWASLQPYKKLS 165


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 332 GGRFCEAWFLLGFVLATAN 276
           G RFC+ W     + +TA+
Sbjct: 94  GPRFCDTWIAFDVMCSTAS 112


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 107 FMYSECLSRESVRQGT 154
           F++ +C    S+RQGT
Sbjct: 17  FLFDKCSGYPSIRQGT 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,097
Number of Sequences: 438
Number of extensions: 2617
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)