Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5904
(305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 0.27
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 0.27
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 0.82
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 0.82
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 1.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 1.9
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 1.9
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 1.9
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 1.9
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 1.9
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 1.9
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 2.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 3.3
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 3.3
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 24 4.4
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 24 4.4
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 24 5.8
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 5.8
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 24 5.8
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 24 5.8
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 23 7.7
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 23 7.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.7
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 23 7.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 23 7.7
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 23 7.7
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch... 23 7.7
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 23 7.7
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 0.27
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +1
Query: 31 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 210
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 211 TEKTQKSLFDGIEKFDSSQLKHTET 285
+KS+ D + +S + T T
Sbjct: 82 NITNKKSVTDNLLLSLTSSNQSTNT 106
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 0.27
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +1
Query: 97 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 255
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 256 DSSQ 267
SSQ
Sbjct: 488 SSSQ 491
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 0.82
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 215 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 84
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 0.82
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +1
Query: 82 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 249
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 250 KFDSSQLKHTETQEK 294
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 1.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 222 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 118
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 187 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 282
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 227 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 129
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 2.5
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 76 DTPSLKDLPKVATDLKSQL--EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 249
D P+ D+ V T+L++ + + + R + +E + T + + + + I+
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61
Query: 250 KFDSSQLKHTETQEKNPL 303
K DSSQ+ + K+PL
Sbjct: 62 KVDSSQILNDNGSHKSPL 79
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.6 bits (51), Expect = 3.3
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 91 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 270
+DL +A S L NT R +D N K L E++ ++ + L EKF + +
Sbjct: 786 RDLVNMAKRFLSSLFSVNT---RKMDVNVKTDLVIGENIELQRYLQQLTQYSEKFLNKES 842
Query: 271 KHT 279
++T
Sbjct: 843 ENT 845
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 3.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 154 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 276
L DVDT ++VL E Q+ DGI +FD+ +KH
Sbjct: 200 LADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 233 KDFWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSF 90
KDF+ ++ SS+ + + + S Q + + +FRS T+ R F
Sbjct: 340 KDFYASALYHSSSANADVIGVGWASNWQYTNQAPTQVFRSAMTVARKF 387
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.2 bits (50), Expect = 4.4
Identities = 17/73 (23%), Positives = 36/73 (49%)
Frame = +1
Query: 4 AECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 183
A+ L +SS +Y + + + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 184 VLPSAEDVATEKT 222
+LP+A+DV+++ +
Sbjct: 784 ILPNADDVSSKNS 796
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 5.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 295 SSPESRC-ASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQS 179
S+P S AS+ ++ TS +SGSS W R EA S
Sbjct: 237 STPASTSYASSTTSATSTSTTSGSSGSSDWGRSSFYEADS 276
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.8 bits (49), Expect = 5.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 67 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 210
SVS TP + P V +L + E F+T D D+ P+ E V+
Sbjct: 265 SVSSTPPVHPPPPVPQNLSAVNEEFDTK-KNDFDSKLPESTPAVEKVS 311
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 23.8 bits (49), Expect = 5.8
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 201 FSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGSVTH 70
FSRR + +G V G L LQ+C LGE + G VT+
Sbjct: 82 FSRRAFTIGVGGPV----GSGKTALLLQLCRLLGEKYSIGVVTN 121
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 23.8 bits (49), Expect = 5.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 215 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 84
S SSA S+ +SRR V+ S FR+VA + RE
Sbjct: 15 SFTNSSAQQLFSKSIAHSSRRNFVISSSCTKFRNVAIQRNAKRE 58
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 23.4 bits (48), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +1
Query: 64 CSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDG 243
C +S P LKD+PK + +EG T ++ T K + + D +T FD
Sbjct: 538 CVISCIPKLKDIPKRVLQ-RLIIEGKYTYYIKRQGTQNKQL--NCRDESTVIPSDFDFDT 594
Query: 244 IEKFDSSQLKHTET 285
+ + +L +T
Sbjct: 595 LHSVSAEELMLLKT 608
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 55 RMACSVSDTPSLKDL-PKVATDLKSQLEGFNTS 150
++ CS+ TP+LKD P+ T + L+ F S
Sbjct: 165 KLKCSLQQTPTLKDTDPEAYTVGRVFLQDFEKS 197
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 23.4 bits (48), Expect = 7.7
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 206 TSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRS 93
TS A S I SLVS+S +Q +S S ATL S
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSS 109
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 271 SAGSNQTSRYRRIKTSGSSQWQRLQQTEAQS 179
SAGS+ + SGS WQ +Q ++ S
Sbjct: 51 SAGSSSLHGLNSLIDSGSIHWQLREQEQSNS 81
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 5 LSARIFYPLPHQKYIDSEWPAP*VTLP 85
+SA F P+P+ Y D+ + A V P
Sbjct: 148 VSANTFIPMPYAHYTDNMYHAKPVNRP 174
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 23.4 bits (48), Expect = 7.7
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 23 YPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCF 190
YPL + + + P +++ P K SP+SP+ S P+ S+ + M ++ +
Sbjct: 306 YPL--SRSVSTPVPMSPISISPAKPSPQSPKL--SQSAVGHPSSSIPAAAMHKVSY 357
>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 208
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 55 RMACSVSDTPSLKDLPKVATDLKSQLEGFN 144
R+ V TP L++L A DL + FN
Sbjct: 115 RVYIQVEKTPGLEELQNAAYDLADTSDPFN 144
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 23.4 bits (48), Expect = 7.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 91 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQK 228
KD+ + LK+ G N + V E PS ED A ++ +
Sbjct: 791 KDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHR 836
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,423
Number of Sequences: 5004
Number of extensions: 23456
Number of successful extensions: 113
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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