Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5904
(305 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 55 1e-08
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 28 1.1
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 27 2.6
Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical p... 27 3.4
Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical pr... 27 3.4
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 27 3.4
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 26 4.5
U61948-4|AAB03146.1| 316|Caenorhabditis elegans Hypothetical pr... 26 4.5
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 26 4.5
AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical ... 26 4.5
Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 26 6.0
AF016658-4|AAB66043.1| 242|Caenorhabditis elegans Hypothetical ... 26 6.0
Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical p... 25 7.9
Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 25 7.9
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 25 7.9
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 25 7.9
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/59 (47%), Positives = 35/59 (59%)
Frame = +1
Query: 127 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPL 303
++E F+++ L EKIVLPSA+D+ EK L D I F S LK TET EKN L
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL 111
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 85 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDS 261
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FDS
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59
Query: 262 SQLKHTETQEK 294
++L T +EK
Sbjct: 60 TKLHSTPVKEK 70
Score = 39.9 bits (89), Expect = 3e-04
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 82 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 255
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT + F
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQM----AASF 129
Query: 256 DSSQLKHTET 285
D S L H ET
Sbjct: 130 DKSALHHVET 139
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 219 LLSGNVFSRRKHNLFIGVDVTETAGVEAFEL 127
LL N+FS H +F+G+ + E + F+L
Sbjct: 58 LLYQNLFSANIHQIFLGITIVERLNIAFFKL 88
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 73 SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 207
S S K+ KVA K QLE SCL ++T E+I A D+
Sbjct: 243 SSEKSTKEKLKVAK--KYQLENLKASCLAKINTLEEIKAALAGDL 285
>Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/51 (21%), Positives = 22/51 (43%)
Frame = -2
Query: 304 KAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 152
+A S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/51 (21%), Positives = 22/51 (43%)
Frame = -2
Query: 304 KAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 152
+A S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/51 (21%), Positives = 22/51 (43%)
Frame = -2
Query: 304 KAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 152
+A S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/51 (21%), Positives = 22/51 (43%)
Frame = -2
Query: 304 KAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 152
+A S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 20 FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKR 181
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARK 69
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 304 KAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 200
K+GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 77 KSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 304 KAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 200
K+GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 77 KSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>U61948-4|AAB03146.1| 316|Caenorhabditis elegans Hypothetical
protein C46A5.6 protein.
Length = 316
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 70 VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEK 180
++++P +D P + FNT+ D+D NE+
Sbjct: 158 ITESPKNRDFPLFFSSFDDTTVLFNTTIAGDIDVNER 194
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 136 GFNTSCLRDVDTNEKIVLPSAEDV--ATEKTQKSLFDGIEKFDSSQLKHTETQEK 294
G N + V+ EK+ S D A EK Q+ L D +EK + E +EK
Sbjct: 169 GHNNYGVPRVNHREKLKFESDFDFEKANEKFQEVLVDNLEKLNIEDKAEPEVEEK 223
>AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical
protein Y18D10A.8 protein.
Length = 507
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 62 PAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMK 178
PAP V +PP TSP + +V+S ++P S PM+
Sbjct: 133 PAPTVGIPPSATSPPT----QVTSSVTSPVPSSPQPPMQ 167
>Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical
protein C17E4.6 protein.
Length = 391
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 214 EKTQKSLFDGIEKFDSSQLKHTETQEKN 297
EKT+K + ++K+++ +L+ +EKN
Sbjct: 224 EKTEKMNIESLKKYEAFELERKRKREKN 251
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 110 ATLGRSFREGVSLTEQAILNQYIFDEEGDRRFVHS 6
AT+G FRE + E +L ++D G R+ S
Sbjct: 131 ATIGVDFRERSCVIENELLRVQLWDTAGQERYRQS 165
>AF016658-4|AAB66043.1| 242|Caenorhabditis elegans Hypothetical
protein B0047.3 protein.
Length = 242
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 85 SLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 210
S++DL K+A QLE T CL ++T ++I A + A
Sbjct: 174 SMRDLLKLAKQF--QLENLKTVCLSKINTLDEIEASMAHNPA 213
>Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical
protein Y41E3.3 protein.
Length = 520
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -2
Query: 199 QQTEAQSFHW----CRRHGDSWC*SLRADSSGLWRPWG 98
QQ+++ S W C+ HG W ++ D+ G+W WG
Sbjct: 95 QQSDS-SLEWLTDDCQLHGFHWRAGVKRDTVGIWL-WG 130
>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical
protein ZK337.1c protein.
Length = 1516
Score = 25.4 bits (53), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 115 LWRPWGGLSGRECHS 71
+WRPW G+ G + S
Sbjct: 674 IWRPWWGIGGSDAQS 688
>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical
protein ZK337.1b protein.
Length = 1501
Score = 25.4 bits (53), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 115 LWRPWGGLSGRECHS 71
+WRPW G+ G + S
Sbjct: 674 IWRPWWGIGGSDAQS 688
>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical
protein ZK337.1a protein.
Length = 1508
Score = 25.4 bits (53), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 115 LWRPWGGLSGRECHS 71
+WRPW G+ G + S
Sbjct: 674 IWRPWWGIGGSDAQS 688
>Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 172 NEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 300
NEK + + V T K LF+ ++D+ + +H+ET +P
Sbjct: 722 NEKYTIKCLDGV-TVTAPKVLFEIYSEYDAGRRRHSETVGDDP 763
>Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 172 NEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 300
NEK + + V T K LF+ ++D+ + +H+ET +P
Sbjct: 722 NEKYTIKCLDGV-TVTAPKVLFEIYSEYDAGRRRHSETVGDDP 763
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 NEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 300
+ KI+ + V T+K SLFD D+ K T + +K P
Sbjct: 390 SRKILANELKPVDTKKLVSSLFDSDSDSDTDIFKPTTSIKKQP 432
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 298 GSSPESRCASAG-SNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGDSWC 143
G+SP R G SN+ + R+ T+G S + + ++ HW WC
Sbjct: 155 GASPSKRRPETGKSNRKAPRGRLFTNGGSDSSSVASSPSRRDHW-EEPTLGWC 206
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 298 GSSPESRCASAG-SNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGDSWC 143
G+SP R G SN+ + R+ T+G S + + ++ HW WC
Sbjct: 155 GASPSKRRPETGKSNRKAPRGRLFTNGGSDSSSVASSPSRRDHW-EEPTLGWC 206
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 298 GSSPESRCASAG-SNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGDSWC 143
G+SP R G SN+ + R+ T+G S + + ++ HW WC
Sbjct: 155 GASPSKRRPETGKSNRKAPRGRLFTNGGSDSSSVASSPSRRDHW-EEPTLGWC 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,867,900
Number of Sequences: 27780
Number of extensions: 134802
Number of successful extensions: 520
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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