Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5904
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   0.64 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   6.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    20   7.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   7.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     20   7.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 67  SVSDTPSLKDLPKVATDLKS 126
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 DLKSQLEGFNTSCLRDVDTNEKIV 186
           +LKS L    + C++++ T ++I+
Sbjct: 21  ELKSGLHTVQSVCMKEIGTAQQII 44


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 298 GSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQ 197
           GSS +   +   S+ T +    K   SS W++L+
Sbjct: 190 GSSGDDLSSEWDSDYTDKSNEKKIPKSSGWRKLR 223


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = -3

Query: 129 LTLQVCGDLGEVFQ 88
           +++Q+ GDLG+V++
Sbjct: 230 ISMQMGGDLGQVYR 243



 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 71  TEQAILNQYIFDEEGDRRFVHSA 3
           T+Q +++ +   +EGD RF+ +A
Sbjct: 176 TQQKLIDDHFLFKEGD-RFLQAA 197


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 96 VFQGGSVTHGAGHSESI 46
          ++ GGS    AG SES+
Sbjct: 35 IYSGGSDWRVAGRSESV 51


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 96  PPQGRHRPEESARRLQHQLSP 158
           PP      EE  ++ +  LSP
Sbjct: 530 PPSSMKETEEEKKKTKQSLSP 550


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 71  TEQAILNQYIFDEEGDRRFVHSA 3
           T+Q +++ +   +EGD RF+ +A
Sbjct: 160 TQQKLIDDHFLFKEGD-RFLQAA 181


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 80 VSLTEQAILNQYIFDEEGDRRFVHSA 3
          VSL  Q I   Y+ D        HSA
Sbjct: 10 VSLQTQRIQGLYLLDNNDSSGIPHSA 35


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 225 LGLLSGNVFSRRK 187
           +GLLSG +  R+K
Sbjct: 131 MGLLSGGIILRKK 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.129    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,883
Number of Sequences: 438
Number of extensions: 1711
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)