Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5902
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0299 - 27677571-27677846,27678009-27678503                       29   3.2  
05_02_0005 - 5538798-5538915,5538924-5539198                           27   9.8  
04_04_1456 + 33738857-33738967,33739114-33739200,33739788-33740813     27   9.8  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    27   9.8  

>02_05_0299 - 27677571-27677846,27678009-27678503
          Length = 256

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 527 VKFSRSELYVSALSGATFD-VTLPIPP 450
           V+F  S LY+ A+SGAT   + LP+PP
Sbjct: 118 VEFDVSSLYIPAMSGATTKFLGLPLPP 144


>05_02_0005 - 5538798-5538915,5538924-5539198
          Length = 130

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 246 VQGGWQELDERSRGSCS 296
           VQGGW + D RSR S S
Sbjct: 53  VQGGWPDRDPRSRSSAS 69


>04_04_1456 + 33738857-33738967,33739114-33739200,33739788-33740813
          Length = 407

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 309 NCSPLSTILGFSHPVPASHPAQIITPPNCFFFGWWYLPVR 190
           NC P     G +    A H + + TP   FFF   Y P R
Sbjct: 159 NCLPAKDNGGLTVDAVAQHMSNLKTPATPFFFNTLYDPFR 198


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 478 VAPERADTYSSDRLNLTPPCITDVRPNKAAPESNFQDI 591
           VAP R      DR +L PP   + + +KA P ++ + +
Sbjct: 345 VAPSRPGIRRDDRTSLVPPASRNEKRDKAHPHADRESV 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,133
Number of Sequences: 37544
Number of extensions: 356928
Number of successful extensions: 977
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)