Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5902
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49908-5|CAA90096.1| 353|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 28 5.0
U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of... 28 6.6
L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. 28 6.6
U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical pr... 27 8.7
U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical p... 27 8.7
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 8.7
AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B prot... 27 8.7
AF025453-4|ABC48262.1| 905|Caenorhabditis elegans Hypothetical ... 27 8.7
AF025453-3|AAM98053.2| 828|Caenorhabditis elegans Hypothetical ... 27 8.7
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 8.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 8.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 8.7
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 8.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 8.7
AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z49908-5|CAA90096.1| 353|Caenorhabditis elegans Hypothetical
protein C07E3.5 protein.
Length = 353
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +1
Query: 397 NFSITRDYVQC*REYIQRGGIGNVTSNVAPERADT-YSSDRLNLTPPCITDVRPNKAAPE 573
N +T D V+ EY R + NV + A+ YSS+ + P + V+ K P
Sbjct: 223 NIRLTDDQVR--EEYFNRQRMYPHEKNVKSKEAENNYSSEADSEDSPEVVPVQQQKRRPR 280
Query: 574 SNF-----QDIRFVDQRF 612
NF ++R V +RF
Sbjct: 281 QNFSNTISNELRIVQERF 298
>U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical
protein R11G1.6c protein.
Length = 811
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 586 LENSIRELLC*AGRPLYRAELNSVDPNCTYQL 491
+ N + + C +GRP EL + DPN YQ+
Sbjct: 175 IANQLYLMGCFSGRPEMDIELRNTDPNAQYQV 206
>U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical
protein R11G1.6d protein.
Length = 809
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 586 LENSIRELLC*AGRPLYRAELNSVDPNCTYQL 491
+ N + + C +GRP EL + DPN YQ+
Sbjct: 175 IANQLYLMGCFSGRPEMDIELRNTDPNAQYQV 206
>U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical
protein R11G1.6b protein.
Length = 901
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 586 LENSIRELLC*AGRPLYRAELNSVDPNCTYQL 491
+ N + + C +GRP EL + DPN YQ+
Sbjct: 265 IANQLYLMGCFSGRPEMDIELRNTDPNAQYQV 296
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical
protein R11G1.6a protein.
Length = 899
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 586 LENSIRELLC*AGRPLYRAELNSVDPNCTYQL 491
+ N + + C +GRP EL + DPN YQ+
Sbjct: 265 IANQLYLMGCFSGRPEMDIELRNTDPNAQYQV 296
>U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of
certain neuronsprotein 1 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 469 TSNVAPERADTYSSDRLNLTPPCITDVRPNKAAPESNFQDIR 594
T+ P T ++ TPP T RPN+ A SN + I+
Sbjct: 351 TTTTTPPPTTTSTTTTTTTTPPPTTTARPNQRAIVSNPETIK 392
>L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 469 TSNVAPERADTYSSDRLNLTPPCITDVRPNKAAPESNFQDIR 594
T+ P T ++ TPP T RPN+ A SN + I+
Sbjct: 351 TTTTTPPPTTTSTTTTTTTTPPPTTTARPNQRAIVSNPETIK 392
>U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical
protein K08F11.2 protein.
Length = 886
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 202 VPPPKKKTVGWSDDLCRVAGRNWMREAED 288
+PPP ++ WS +L R W ++ ED
Sbjct: 1 MPPPSNQSA-WSSNLLNARKRRWKKDEED 28
>U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical
protein K08D10.1 protein.
Length = 895
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 202 VPPPKKKTVGWSDDLCRVAGRNWMREAED 288
+PPP ++ WS +L R W ++ ED
Sbjct: 1 MPPPSNQSA-WSSNLLNARKRRWKKDEED 28
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 288 ILGFSHPVPASHPAQIITPPNCFF 217
I G S P PAS P++++ PP F
Sbjct: 6355 IYGISDPSPASPPSRLMAPPQPVF 6378
>AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B
protein.
Length = 750
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 288 ILGFSHPVPASHPAQIITPPNCFF 217
I G S P PAS P++++ PP F
Sbjct: 434 IYGISDPSPASPPSRLMAPPQPVF 457
>AF025453-4|ABC48262.1| 905|Caenorhabditis elegans Hypothetical
protein C08F1.5b protein.
Length = 905
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 49 GVSLWSEAE*RHRLRWNIQ 105
G WS+ E RH L+W IQ
Sbjct: 531 GEKQWSDTETRHNLQWRIQ 549
>AF025453-3|AAM98053.2| 828|Caenorhabditis elegans Hypothetical
protein C08F1.5a protein.
Length = 828
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 49 GVSLWSEAE*RHRLRWNIQ 105
G WS+ E RH L+W IQ
Sbjct: 454 GEKQWSDTETRHNLQWRIQ 472
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 288 ILGFSHPVPASHPAQIITPPNCFF 217
I G S P PAS P++++ PP F
Sbjct: 5715 IYGISDPSPASPPSRLMAPPQPVF 5738
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 288 ILGFSHPVPASHPAQIITPPNCFF 217
I G S P PAS P++++ PP F
Sbjct: 6355 IYGISDPSPASPPSRLMAPPQPVF 6378
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 288 ILGFSHPVPASHPAQIITPPNCFF 217
I G S P PAS P++++ PP F
Sbjct: 6355 IYGISDPSPASPPSRLMAPPQPVF 6378
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 288 ILGFSHPVPASHPAQIITPPNCFF 217
I G S P PAS P++++ PP F
Sbjct: 5715 IYGISDPSPASPPSRLMAPPQPVF 5738
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 288 ILGFSHPVPASHPAQIITPPNCFF 217
I G S P PAS P++++ PP F
Sbjct: 6355 IYGISDPSPASPPSRLMAPPQPVF 6378
>AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical
protein Y20F4.5 protein.
Length = 725
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 202 VPPPKKKTVGWSDDLCRVAGRNWMREAED 288
+PPP ++ WS +L R W ++ ED
Sbjct: 1 MPPPSNQSA-WSSNLLNARKRRWKKDEED 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,507
Number of Sequences: 27780
Number of extensions: 284283
Number of successful extensions: 688
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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