Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5901
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   1.7  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.9  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   5.1  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   8.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.9  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   8.9  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 430 SECSMCSPLDSGKMPPWILLHSL 362
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 181 NQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQ 312
           + V G+D L  D++  +      D  +LFTK +  + ++  DIQ
Sbjct: 212 DSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDIQ 255


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +1

Query: 481 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQ-GSGLQPDT*H-CGSIRRSRWRDILL 654
           + AYS   ++ F   P  LN  +NY D   N Y   +GLQP   H C   R+  +    L
Sbjct: 124 SLAYS--DDDEFPSSPEELNSHVNYPDVR-NVYDCHTGLQPLVDHDCIEDRQKTFASKQL 180

Query: 655 ICLPWCWWSXGSRRRTASPRF 717
             LP    S  S RR A   F
Sbjct: 181 PTLPLQKSSKLSNRRPALHSF 201


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 561 RQRKCLPGKRSTTRHLTLWKY 623
           +Q+ CL  K  T +HL +W +
Sbjct: 162 KQQSCLGSKNVTDKHLMVWAF 182


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 667  WCWWSXGSRRRTASPRFIGQT*ITTFSVS 753
            W  WS   RR  A+P + G   IT  SVS
Sbjct: 1789 WLTWSYMYRRLVANPAYYGLQDITHESVS 1817


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 181 NQVVGDDALVDDDESVVKSSQDIDTTILF 267
           N +V DDA  DD+  +  SS  ++T  LF
Sbjct: 44  NSLVVDDATNDDNSVITLSSNTMETLQLF 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,026
Number of Sequences: 5004
Number of extensions: 54762
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)