Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5901
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565...    43   3e-04
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429...    30   2.3  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    28   7.1  

>06_03_1396 +
           29855256-29855328,29856019-29856180,29856466-29856516,
           29857189-29857277,29857632-29857709,29857811-29858014,
           29858101-29858172,29858262-29858306
          Length = 257

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
 Frame = +1

Query: 187 VVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVD 366
           +V DD  V  D   +  +  ++T  +F K    +      + AG   E  VG  N+G   
Sbjct: 47  IVSDDTQVSSD-GPLSPAPGVETVCVFPKNAGKI------VLAGEETELLVGLQNEGEST 99

Query: 367 YVVESMEASFRYPMDYTYYIQNFTALP-YNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 543
             V ++ ++   P D+  Y QN T    +N  V    +ATF Y+F  ++      + L  
Sbjct: 100 LNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATFPYTFAVSKFLQPGAYDLVG 159

Query: 544 QLNYRDASGNAYQ 582
            + Y +   N YQ
Sbjct: 160 YIVY-EIDQNPYQ 171


>10_02_0022 -
           4290708-4290788,4291254-4291305,4291396-4291484,
           4291565-4291615,4291699-4291893,4292010-4292090,
           4292190-4292252,4292480-4292554,4292630-4292710,
           4292784-4292888,4292977-4293057,4293156-4293242,
           4293322-4293369,4293923-4293987,4294109-4294172,
           4294828-4294896
          Length = 428

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 184 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 315
           Q+VGDD LV +   V K+ Q+     L  K V  +G +T  I+A
Sbjct: 326 QIVGDDLLVTNPTRVAKAIQEKSCNALLLK-VNQIGSVTESIEA 368


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 184 QVVGDDALVDDDESVVKSSQDIDT-TILFTKPVPSLGDLTFD-IQAGYPVEFFVGFINK 354
           +V+G + L+D    + K  +D+D  TI   +  P       D I++ Y  EFF+GF+ +
Sbjct: 81  EVLGGNELIDSQIDI-KFGRDVDKGTICSIELDPDKAKQLSDAIESSYWFEFFIGFVGE 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,031,524
Number of Sequences: 37544
Number of extensions: 362327
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)